Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00042 ATGTCCGCCACCAACGTCGTTGTTCTAGACAACGGCGGCGGCCTCATCAAAGCTGGCTTCGGCGGCGAACGCGACCCGGCCGCCATTCTCCCTAACTGCCTCTACCGCTCCCCCGCCTCCAAGAAATGGCTTCATCCACATCCTCTTCCCACCACAACTTCCACCGATTCCGCCGCCTCCGAACCCGACCTCACCTCCGCCGCCGTCCGCCGCCCCTTCGACCGCGGCTACCTAATAAACTCCGATCTCCAACGAGAAATCTGGTCTCACCTCTTCTCATCAATCCTCCGCATAAACCCTACACAATCCTCTCTTCTCGTCACCGAACCCTTGTTCACTCTTCCCTCCATTCAACGCTCACTCGACGAGCTCGTGTTCGAAGATTTCAATTTTAGGGCACTGTACGTGGCAGATTCTCCCTCACTGGTGCACCTGTACGAAGCGAGTCGCAGGCCCGATGGGCTTGTGTCACGGGCTCAGTGCAGCCTTGTTGTTGATTGTGGATTCTCATTCACGCATGCTTCGCCTGTGTTTCAGAACTTCACGCTTAATTATGGTGTTAAGAGAATCGATTTGGGTGGGAAGGCGCTTACTAATTACCTGAAGGAGCTTGTTTCGTTTCGGTCTGTTAATGTCATGGAGGAGACCTTCCTCATTGATGATGTCAAAGAGAAGCTCTGTTTCGTCTCCCTCGACGTGCCCCGCGACCTTCGCCTTGCCAGGGAAAGTGGAAGACAGAATCCCTTCAGATGCACATATGTGCTTCCCGATGGTATCACGTACACCAAGGGTTTTGTTAAGTATCCAGAACGAATACACAACTATCTTGCCTTGAAGGATGGTAATGGTGGCTTTCCTCCTGTTCCAGAGGAAACAAAGGAGAATATGAATCCCCTGGAAATGGCTAAGTTGCCTCAAGACCGAAACAGAATTGATTTGTCGAAAAATGAATTTGATTTGACAAACGAACGGTTTCTTGTCCCTGAGATGATGTTCCATCCTGCCAATTTGGGTATGAATGAAGCTGGGCTAGCAGAATGTATTGTTCGAGCTGTCAATTCGTGTCATCCACACCTCCACCCCGTACTCTATGAAAGCATAATTTTAACTGGTGGAAGCACGCTATTTCCACAGTTTGCTGAGAGATTAGAGAAGGAGCTCCGGCCGCTCGTTCCCGATGACTATCATGTGAAGATAACTACTCAAGAAGATCCCATACTAGGTGTCTGGCGTGGAGGATCTCTATTGGCGTCAAGTCCAGATTTTGAAGCAATGTGTGTAACCAAGTCTGAATATGAAGAGCATGGTTCTGCTAGATGCCGCAAGAGATTCTTTCATTAA 1341 0.4981 MSATNVVVLDNGGGLIKAGFGGERDPAAILPNCLYRSPASKKWLHPHPLPTTTSTDSAASEPDLTSAAVRRPFDRGYLINSDLQREIWSHLFSSILRINPTQSSLLVTEPLFTLPSIQRSLDELVFEDFNFRALYVADSPSLVHLYEASRRPDGLVSRAQCSLVVDCGFSFTHASPVFQNFTLNYGVKRIDLGGKALTNYLKELVSFRSVNVMEETFLIDDVKEKLCFVSLDVPRDLRLARESGRQNPFRCTYVLPDGITYTKGFVKYPERIHNYLALKDGNGGFPPVPEETKENMNPLEMAKLPQDRNRIDLSKNEFDLTNERFLVPEMMFHPANLGMNEAGLAECIVRAVNSCHPHLHPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYHVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEEHGSARCRKRFFH 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00042 446 PANTHER ACTIN 7 437 IPR004000 -
Stsc241666g00042 446 FunFam Actin-related protein 6 137 197 - -
Stsc241666g00042 446 SMART actin_3 4 445 IPR004000 -
Stsc241666g00042 446 Pfam Actin 4 445 IPR004000 -
Stsc241666g00042 446 FunFam ARP5 actin-related protein 5 homolog 342 408 - -
Stsc241666g00042 446 CDD NBD_sugar-kinase_HSP70_actin 7 204 - -
Stsc241666g00042 446 FunFam Actin-related protein 6 198 259 - -
Stsc241666g00042 446 SUPERFAMILY Actin-like ATPase domain 4 145 IPR043129 -
Stsc241666g00042 446 Gene3D - 140 416 - -
Stsc241666g00042 446 FunFam Putative actin-related protein 5 409 437 - -
Stsc241666g00042 446 Gene3D Actin; Chain A, domain 4 200 349 - -
Stsc241666g00042 446 SUPERFAMILY Actin-like ATPase domain 160 445 IPR043129 -
Stsc241666g00042 446 Gene3D - 7 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00042 Stsc-Chr241666 298087 301141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241666g00042 7 445 Cytoskeleton Gene Families AT5G09810 26.196 6.86e-48 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00042 K11662 - gmx:100819827 703.745