Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00037 ATGACTCGCACGCTAAGAATCCTCCAATCCGCCACCGCCAACAACGCCACCACCACCACCGCCATAGCTGCTGCCGTTCCACCGGCCGAGGCAGCCTCAGTAGAGTCCGACTTCGTCGTCATCCTAGCTGCGCTGCTCTGCGCACTCATCTGCGTCGTCGGCCTCATCGCCGTCGCAAGATGCGCCTGGCTCCGCCGTATCCCCGTCGCAGGCACCGGATCTTCGCCACATCAGGCACTCGCAAACCGTGGACTCAAGAAGAAGGTACTCAACTCGCTACCTAAATTCACCTACGCCGACGGCGACGGCAACGGCGCCGGTGCCGGTGATGACTCCGGCGTACGGAGGAAGTGGACAGCCACATCGGAATGCTCAATTTGCCTTACGGAATTCGCTGCCGGCGACGAGGTCCGGGTGCTTCCGCAGTGCGGCCACGGCTTCCACGTGGCATGTATTGACACGTGGCTGGGATCACACTCATCCTGCCCGTCCTGCCGCGCTGTCTTGGCAGTTGGGAGATGCCAGAAGTGCGGCCAGTTCCCGGCTGTTCCAAACGGCGCCGCTGTAGTAGCAATTGCCGTCGAAACAGACTCAAAGTCGGTCGACAGCAATGCTAACGGTGGCGCCGCAAGTAATAGCCGGCATAGCGGCAGTGATTTCTTGCCGTGA 669 0.6129 MTRTLRILQSATANNATTTTAIAAAVPPAEAASVESDFVVILAALLCALICVVGLIAVARCAWLRRIPVAGTGSSPHQALANRGLKKKVLNSLPKFTYADGDGNGAGAGDDSGVRRKWTATSECSICLTEFAAGDEVRVLPQCGHGFHVACIDTWLGSHSSCPSCRAVLAVGRCQKCGQFPAVPNGAAVVAIAVETDSKSVDSNANGGAASNSRHSGSDFLP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00037 222 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Stsc241666g00037 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 171 IPR013083 -
Stsc241666g00037 222 SMART FANCL_C_2 120 174 - -
Stsc241666g00037 222 SUPERFAMILY RING/U-box 123 170 - -
Stsc241666g00037 222 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 28 178 - -
Stsc241666g00037 222 CDD RING-H2_EL5-like 123 166 - -
Stsc241666g00037 222 MobiDBLite consensus disorder prediction 200 222 - -
Stsc241666g00037 222 SMART ring_2 124 165 IPR001841 -
Stsc241666g00037 222 Pfam Ring finger domain 123 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00037 Stsc-Chr241666 234700 235741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241666g00037 1 177 C3H Transcription Factor Family AT1G76410 57.459 7.90e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00037 - - pcin:129322223 242.662