Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00030 ATGAGCAAAGTTTGGGTTCTTATTGTCCTTGTGATATATCTTTCAAATGGTGGAATATTATTGAGCAATGTTTGTGCAAAACCACGTCCTGATCATGTTAACATAGGAGCAATTTTAGCTTTCAACTCAACCATTGGAAAGGTGGCAAAAATTGCTATAGAAGCAGCAGTGGATGATGTAAATTCAGATCCAACAATTCTCAATGGAACCAAGCTTAATATCTCAATGCAAGACACTAAACTCTCAATCGGATTTCTAGGAATCATTGACTCATTGCTATTGATGGAGAAAGACACTGCAGCCATAATTGGTCCACAATACTCAGTAATGGCTCATGTGATCTCACACATTGCAAATGAAATGCAAGTTCCTCTCTTATCATTTGCAGCATCAGACCCTACCCTAACTTCCCTCCAATTCCCCTATTTTGTTAGAACAACTCAGAGTGATCTTTATCAAATGTCTGCAGTGGCAGACATTGTTGATCACTTCCAATGGAGAGATGTCATTGCAATCTTCATTGATGATGATCATGGAAGAAACGGGGTCGCTGCCTTAGGCGACAAGCTAGCCGAAAAGCGCGGCAAAATCTCATACAAAGCAGCCCTTAAGCCTGATGATAACAACAACAAGGAAGAAATCAATAGTGCATTAGTTAAAATTGCTTTGATGGAATCTAGGGTTATAGTTCTTCACATTTACCCTTCATTTGGCCTTGAAGTTCTTCACATTGCACAGACCCTAGGCATGATGGGAAGTGGTTATGTTTGGATTGTCACTGATTGGCTCACAACTGCTCTTGATTCTGATCCATCATTGTTAGCTTCAAGCTCAATCATGAATGATATGCAAGGTGTTATCACCTTGAGAATGTTCACCCCAAATTCAAGAATCAAGAGCAATTTTGAGTCTAGGTGGCCCAAATTAGCCCATCAAAATGAAAAGGGTTTTTCTTTAGGGTTGAACATCTTTGCTTTATATGCTTATGACACTGTTTGGGCCTTAGCTTATGCACTTGATGAATTCTTTAGCAATGGTGGAACTTTGACTTTTTCAAATGATTCAATTCTAAACACCTTAAGGGGTGATTCCCTTCATCTTGATACCATGGGAGTGTTTCTCAATGGTAGCATCTTGCTTCAAAAGATTCTAGAAGTTAACCGAACCGGTTTAACCGGCCGGATGGTTTTTTCTCAAGATGGAAACCTAATGAATCCATCATATGAGATCATTAATGTGATTGGAAGTGGGGTTAGGAGGATAGGGTTTTGGTCCAATTCTTCTGGCCTTCATAGTGGAGAACAAGTTCCAAATCATGTGAATTCAAGTGAGGGATTATATGGTGTGATTTGGCCTGGTCAAACAACACAAACACCTAGAGCTGCATTGGATTTGTTGCCTTATCCAGTCCCATATAAGTTTATTCCATTTGGTGATGGTAAAACCAATCCATTGAATTCAATGCTTCTTCAGAAGATCACAGCTGGGGAGTTTGATGCTGTGGTGGGGGACATAACCATTACCACAAACAGAACTAAGATAGTGGATTTCACACAACCATACATTGAATCTGGTTTAGTTGTTGTGGCACCTATAAGGAAGATGAAATCAAATGCTTGGGCCTTTCTAAGACCATTTACTCCAATGATGTGGCTTGTGACTGGAATGTTTTTCTTAGCTGTTGGAGCTGTTATTTGGATTTTAGAACGTCGCTTGAATGATGATTTTAGAGGCACTCCTAGGAGACAATTCGTCACCATTATATGGTTTAGCTTCTCAACCTTGTTTTTTGCTCATAGAGAGAGAACTGTTAGCACTCTTGGTAGGTTAGTGCTAATCATATGGCTATTTGTGGTTCTAATATTGAATTCAAGCTACATTGCAAGCTTGACTTCGATTCTCACAGTTGAACAACTCTCTTCCCCAATTAAGGGGATTGAAAGCTTAGCAACAAGCAATGAACGAATTGGTTACTTGAGAGGCTCTTTTGCTGAGAATTATCTTACAGATGAACTTAACATACATAGGTCAAGGCTTGTTCCTCTGAATGATCCTTCAGAGTATGAGAAGGCATTGAAAGATGGAGGAGCTAATGGTGGTGTTGCTGCAATCATTGATGAACGTGCATACATGGAACTCTTCTTAGCAACTAGATGTCAATTTGGGATTGTTGGTCAAGAGTTTACTAAGATGGGATGGGGCTTTGCCTTTCCAAGGGACTCTCCCTTAGCAATAGACATGTCAACAGCAATTCTAAAACTATCAGAGAATGGAGATCTTCAAAGAATTCATGACAAATGGTTAACAAGAAGTGCTTGTAGCTCAGAAGGTGCAAAGCAAGGCATTGATAGGCTTGAGATTAAGAGCTTTTGGGGTCTCTTCCTTCTAATTGGCATTGCATGCTTCATTGCTCTCCTTTGCCATGTTATTAGGATGGCTTACCGTTTTAAGAGGCATTATTCAAACAACAACAATAACAACCTTGAAGTTGAAGGCTCATCATCTTCATGTTCTTCCGTATCAAATCTTTCTTTTCATTTGTCAATGAAAGAGAAGAGGATGAAGAGAAGATGGAAGATAGAAATGGAAAAAAGAGACGGCGCAAAAATAATAGAGTAG 2619 0.3944 MSKVWVLIVLVIYLSNGGILLSNVCAKPRPDHVNIGAILAFNSTIGKVAKIAIEAAVDDVNSDPTILNGTKLNISMQDTKLSIGFLGIIDSLLLMEKDTAAIIGPQYSVMAHVISHIANEMQVPLLSFAASDPTLTSLQFPYFVRTTQSDLYQMSAVADIVDHFQWRDVIAIFIDDDHGRNGVAALGDKLAEKRGKISYKAALKPDDNNNKEEINSALVKIALMESRVIVLHIYPSFGLEVLHIAQTLGMMGSGYVWIVTDWLTTALDSDPSLLASSSIMNDMQGVITLRMFTPNSRIKSNFESRWPKLAHQNEKGFSLGLNIFALYAYDTVWALAYALDEFFSNGGTLTFSNDSILNTLRGDSLHLDTMGVFLNGSILLQKILEVNRTGLTGRMVFSQDGNLMNPSYEIINVIGSGVRRIGFWSNSSGLHSGEQVPNHVNSSEGLYGVIWPGQTTQTPRAALDLLPYPVPYKFIPFGDGKTNPLNSMLLQKITAGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKMKSNAWAFLRPFTPMMWLVTGMFFLAVGAVIWILERRLNDDFRGTPRRQFVTIIWFSFSTLFFAHRERTVSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPIKGIESLATSNERIGYLRGSFAENYLTDELNIHRSRLVPLNDPSEYEKALKDGGANGGVAAIIDERAYMELFLATRCQFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLTRSACSSEGAKQGIDRLEIKSFWGLFLLIGIACFIALLCHVIRMAYRFKRHYSNNNNNNLEVEGSSSSCSSVSNLSFHLSMKEKRMKRRWKIEMEKRDGAKIIE 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00030 872 CDD PBP1_GABAb_receptor_plant 34 430 IPR044440 -
Stsc241666g00030 872 Pfam Ligand-gated ion channel 770 801 IPR001320 GO:0015276|GO:0016020
Stsc241666g00030 872 Pfam Bacterial extracellular solute-binding proteins, family 3 488 769 IPR001638 -
Stsc241666g00030 872 SUPERFAMILY Periplasmic binding protein-like I 29 425 IPR028082 -
Stsc241666g00030 872 Gene3D - 685 775 - -
Stsc241666g00030 872 FunFam Glutamate receptor 665 772 - -
Stsc241666g00030 872 FunFam Glutamate receptor 539 669 - -
Stsc241666g00030 872 Gene3D - 51 405 - -
Stsc241666g00030 872 Pfam Receptor family ligand binding region 51 415 IPR001828 -
Stsc241666g00030 872 SUPERFAMILY Periplasmic binding protein-like II 464 770 - -
Stsc241666g00030 872 Gene3D - 149 430 - -
Stsc241666g00030 872 Gene3D - 539 673 - -
Stsc241666g00030 872 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 328 340 - -
Stsc241666g00030 872 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 46 62 - -
Stsc241666g00030 872 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 107 135 - -
Stsc241666g00030 872 Gene3D - 460 538 - -
Stsc241666g00030 872 FunFam Glutamate receptor 149 306 - -
Stsc241666g00030 872 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 826 IPR015683 -
Stsc241666g00030 872 SMART GluR_14 448 770 IPR001320 GO:0015276|GO:0016020
Stsc241666g00030 872 PIRSF IGluLR_plant 460 869 IPR017103 -
Stsc241666g00030 872 PIRSF IGluLR_plant 2 462 IPR017103 -
Stsc241666g00030 872 FunFam Glutamate receptor 449 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00030 Stsc-Chr241666 156048 162749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241666g00030 5 866 Ion Channels AT3G51480 53.642 0.0 970
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00030 K05387 - gmx:100790502 1316.21