Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00027 ATGATGTCGTGTTCTCCATCATCATCATCATCTGAAGAAGAAGATGAGGGCTTCGAATCTTATAGAAGAGGAGGTTATCATGCTGTTAAAATTGGTGATCAATTTGCAGGTGGAAGATACATAGCACAAAAGAAGCTTGGTTGGGGTCAATTTTCCACCGTTTGGCTTGCTTATGATACTAAAGATGAGAAATATGTTGCTCTCAAGATCCAAAAAAGTGCAGCACAATTTGTTCAAGCTGCACTTCATGAGATTGATATCCTTTCGGCCATTGGAGATGGCACCCCTTCATATACAAAATTTGTTGCTCAACTAATTGACCAATTTAAGCACACTGGCCCCAATGGCAGTCACCTTTGCATGGTTCTTGAGTTTCTTGGTGATAGCTTACTTCGTCTAATCAGATTCACGCGTTACCGAGGCGTTCCGTTGACGAAAGTTAGGGAGATTTGCACATGCATTTTGATCGGTTTGGATTACTTACATCGAGAACATGGTATCATTCATACCGATCTTAAACCCGAAAACATTCTTTTTATTTCTCCTATTGATCCCTCCAAAGATCCTTTTAGATCGGGAGCATCTCCCATTCTGGAAAGGCCCGAAGGAGGAATCAACAGAAACAGTGTTGCCAGTCATATGGAGAAAAGGCTAAAAAGGCGAGCGAGGAAAATGAGTATGAGTTTATCCCTCGGACGAGGGAATTCGATACAAGAATATCTAAAACCGAACCGAAACATCGATGAAATCGATGTTAGATGCAAGATAGTTGATTTTGGGAATGCTTGTTGGGCTGATAATCAATTTACAGATATGGTTCAAACAAGGCAATATAGGGCTCCAGAAGTTATATTGCAAGCTGGGTATTCATTTTCTATTGATATGTGGTCTTTTGCTTGTATTGCTTTTGAGCTTGCAACTGGTGATATGTTGTTCAATCCTAGGGCTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCTATGATGATGGAACTCCTAGGAAAGTTCCCTAAGAAGGTTGCTACATCTGGAGCAAAATGCAAGGATTTCTTTGACAGACATGGAGATTTGAAAAGAATAAGAAGGCTAAAAATGTGTCCACTGAAGAAATTGTTAGTTGAGAGATACAAATTTTCAGAGAAAGATGGGAATGAATTCTCAGAATTTCTGTTGGCACTTCTTGATCTTTCACCAGAGAAAAGGCCAACTGCACAACAATGCTTGCAACACCCTTGGCTTAATGCCATAGACTATGCTCCTATTGACATCTTCAATAATCAAAATAATAATAATCTTGAAAATCTTAATGTTGGGATCAGAAACCTTGAAATTGCTGTAGGAAAGTGA 1350 0.3956 MMSCSPSSSSSEEEDEGFESYRRGGYHAVKIGDQFAGGRYIAQKKLGWGQFSTVWLAYDTKDEKYVALKIQKSAAQFVQAALHEIDILSAIGDGTPSYTKFVAQLIDQFKHTGPNGSHLCMVLEFLGDSLLRLIRFTRYRGVPLTKVREICTCILIGLDYLHREHGIIHTDLKPENILFISPIDPSKDPFRSGASPILERPEGGINRNSVASHMEKRLKRRARKMSMSLSLGRGNSIQEYLKPNRNIDEIDVRCKIVDFGNACWADNQFTDMVQTRQYRAPEVILQAGYSFSIDMWSFACIAFELATGDMLFNPRAGQGFSEDEDHLAMMMELLGKFPKKVATSGAKCKDFFDRHGDLKRIRRLKMCPLKKLLVERYKFSEKDGNEFSEFLLALLDLSPEKRPTAQQCLQHPWLNAIDYAPIDIFNNQNNNNLENLNVGIRNLEIAVGK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00027 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Stsc241666g00027 449 ProSiteProfiles Protein kinase domain profile. 40 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241666g00027 449 Gene3D Transferase(Phosphotransferase) domain 1 94 414 - -
Stsc241666g00027 449 Pfam Protein kinase domain 41 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241666g00027 449 Pfam Protein kinase domain 252 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241666g00027 449 FunFam Protein kinase superfamily protein 26 125 - -
Stsc241666g00027 449 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 233 423 - -
Stsc241666g00027 449 SUPERFAMILY Protein kinase-like (PK-like) 34 421 IPR011009 -
Stsc241666g00027 449 SMART serkin_6 40 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241666g00027 449 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Stsc241666g00027 449 Gene3D Phosphorylase Kinase; domain 1 26 125 - -
Stsc241666g00027 449 FunFam Serine/threonine-protein kinase SRPK-like protein 244 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00027 Stsc-Chr241666 142951 145920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241666g00027 8 417 EF-hand Containing Proteins AT5G22840 48.485 5.91e-157 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Stsc241666g00027 Pkinase 4.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00027 K08832 - gmx:100811724 659.062