Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc241666g00024 | ATGCCGAAGGTTAAAGCCGACGCGAAAGCTGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAACTGGTAGGAAGCAGGCGAAGAAGGCTAAGGATCCTAACAAGCCGAAGAGGCCTCCAAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAATTCAAGAAGGAGCATCCAAACAACAAATCCGTGGCAGTTGTTGGCAAGGCTGGTGGTGACAGGTGGAAACAAATGTCTGATGCTGACAAAGCTCCCTACCAAGCTAAGGCAGAGAAGAAGAAAGAGGAGTATGAAAGGACTATGCAAGCCTACAACAAGAAATTGGTAACTACATGCTTTTATCTTAGACACAATTCTGATTTGATGATCCTTTTTATTGATTTCATGATTATTGGTTTGTGTGTTCAGGAGGGTAAGGGTCCTTCTGAGGAAGATGAATCTGACAAGTCAAAGTCTGAAGTAAATGATGAGGATGATGATGAGGTGGATTCAATATAA | 498 | 0.4398 | MPKVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGDRWKQMSDADKAPYQAKAEKKKEEYERTMQAYNKKLVTTCFYLRHNSDLMILFIDFMIIGLCVQEGKGPSEEDESDKSKSEVNDEDDDEVDSI | 165 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc241666g00024 | 165 | CDD | HMG-box_AtHMGB1-like | 37 | 86 | - | - | |
Stsc241666g00024 | 165 | SUPERFAMILY | HMG-box | 22 | 106 | IPR036910 | - | |
Stsc241666g00024 | 165 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 36 | 105 | IPR009071 | - | |
Stsc241666g00024 | 165 | MobiDBLite | consensus disorder prediction | 75 | 95 | - | - | |
Stsc241666g00024 | 165 | MobiDBLite | consensus disorder prediction | 138 | 165 | - | - | |
Stsc241666g00024 | 165 | Pfam | HMG (high mobility group) box | 36 | 105 | IPR009071 | - | |
Stsc241666g00024 | 165 | Coils | Coil | 87 | 107 | - | - | |
Stsc241666g00024 | 165 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 4-RELATED | 5 | 161 | IPR031061 | - | |
Stsc241666g00024 | 165 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Stsc241666g00024 | 165 | MobiDBLite | consensus disorder prediction | 150 | 165 | - | - | |
Stsc241666g00024 | 165 | SMART | hmgende2 | 35 | 106 | IPR009071 | - | |
Stsc241666g00024 | 165 | Gene3D | High mobility group box domain | 20 | 112 | IPR036910 | - | |
Stsc241666g00024 | 165 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc241666g00024 | Stsc-Chr241666 | 122462 | 124308 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Stsc241666g00024 | HMG_box | 6.6e-24 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc241666g00024 | K25507 | - | gmx:100305957 | 178.718 |