Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00024 ATGCCGAAGGTTAAAGCCGACGCGAAAGCTGCTGATAACCGGTTGAAGCGCAAGGGCGCTGGAACTGGTAGGAAGCAGGCGAAGAAGGCTAAGGATCCTAACAAGCCGAAGAGGCCTCCAAGCGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAATTCAAGAAGGAGCATCCAAACAACAAATCCGTGGCAGTTGTTGGCAAGGCTGGTGGTGACAGGTGGAAACAAATGTCTGATGCTGACAAAGCTCCCTACCAAGCTAAGGCAGAGAAGAAGAAAGAGGAGTATGAAAGGACTATGCAAGCCTACAACAAGAAATTGGTAACTACATGCTTTTATCTTAGACACAATTCTGATTTGATGATCCTTTTTATTGATTTCATGATTATTGGTTTGTGTGTTCAGGAGGGTAAGGGTCCTTCTGAGGAAGATGAATCTGACAAGTCAAAGTCTGAAGTAAATGATGAGGATGATGATGAGGTGGATTCAATATAA 498 0.4398 MPKVKADAKAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKAGGDRWKQMSDADKAPYQAKAEKKKEEYERTMQAYNKKLVTTCFYLRHNSDLMILFIDFMIIGLCVQEGKGPSEEDESDKSKSEVNDEDDDEVDSI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00024 165 CDD HMG-box_AtHMGB1-like 37 86 - -
Stsc241666g00024 165 SUPERFAMILY HMG-box 22 106 IPR036910 -
Stsc241666g00024 165 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 36 105 IPR009071 -
Stsc241666g00024 165 MobiDBLite consensus disorder prediction 75 95 - -
Stsc241666g00024 165 MobiDBLite consensus disorder prediction 138 165 - -
Stsc241666g00024 165 Pfam HMG (high mobility group) box 36 105 IPR009071 -
Stsc241666g00024 165 Coils Coil 87 107 - -
Stsc241666g00024 165 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 161 IPR031061 -
Stsc241666g00024 165 MobiDBLite consensus disorder prediction 1 36 - -
Stsc241666g00024 165 MobiDBLite consensus disorder prediction 150 165 - -
Stsc241666g00024 165 SMART hmgende2 35 106 IPR009071 -
Stsc241666g00024 165 Gene3D High mobility group box domain 20 112 IPR036910 -
Stsc241666g00024 165 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00024 Stsc-Chr241666 122462 124308 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc241666g00024 HMG_box 6.6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00024 K25507 - gmx:100305957 178.718