Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00015 ATGGGAGGTGACAGTGCCGCAGAGAGTCCTACGGATTCAAAGCTCTCCGAGCCCGTCAGCATCAACATTCGTTGTTCCAATGGTTCCAAGTTCTCCGTTCAGATTTCCCTCGATTCCACCGTCGGATCCTTCAAGGAAGTTGTTTCTGGCAGCTGCGATATCCCTGCGGAACAGCAGCGCCTGATTTACAAGGGTCGGATCCTCAAGGACGATCAGACTCTACAAAGCTATGGATTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTTCACACCTTCCAATACAAGTGGGGGCACAAATACGAGTGGCACCAATACCGCCACGACTAATACCAGAAGTACTGGTGCTGCTGAGGGTGGGGGTTTAGGGGGGCTTGGTTTTGGAGCTTCATTATTTCCTGGATTAGGTATGAATGGGATTGGAGGCAATAACCCATTTGGAGAGGGATTTCCGGATCTTGATCAGATGCAGCAACCGTTTATTTCAAATCCCAATTTAATGAGAGAAATTATGAACACACCTGCTATGCAGAACCTAATAAATAATCCTGAGATTGTGCGGAATCTTATAATGAGTAACCCGCAGATGCAGGAGCTCATGGATCGGAATCCCGAGTTAGCTCACATACTTAATGATCCAAGCACCCTCCGCCAGACACTTGAAGCTACACGGAACCCTGAGATCATGCNNNNNNNNNNTGACAGAGCCATGAGCAACATTGAAGCGTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCTACTACGATGGCTGGAAACACAGGAGGCAACAATACACCTCTTTCTGGGACTCAAGCCAGGGACCAATCAACAAATCCCTCAACTACTAACTCTGAAGCAACTGCTGGTTCTCCATTACCCAATACTAACCCGCTCCCCAATCCTTGGTCCTCTACTGGAACTGGTGGTGCCCAAAATAACAACAGAAGGTCAACCCCTGCTGGTGGAGATGCTAGGCAGCAGGCACCTACTGGCTTAGGAGGGCTTGGACTGCCAGATCTTCAAGGCATGCTGGGCGGCAATGCTATGCCAGATCCTGCTTTGATGGCCCAGTTAATGCAAAATCCAGCTATCTCAAATATGATGCAAAGTATCCTTTCCAACCCACAAACTTTGAATCAGATGCTTGGAGCTAATGCTGATCAGCGTGGCATGCCTGATTTGAATTCTCTTAGAGAAGTGATGCAAAATCCGGAGTTCCTTCGCATATTTTCATCACCTGAGACACTGCAGCAACTCATGTCTTTTCAGCAGGCTCTTATGTCTCAGATTGGTCAACAACAGCAATCGCGGGAACCAGGTCAAACCGGCGGAGGTACTGGTGCTTTGAACAACATGGCAGGTTTGGAGTTGTTATCAAGCATGTTCGGTGGACTCGGAACTGGTAGCCTAGCTGTTCCAAATAGATCAAACGAGCCACCGGAGCAGTTGTATGCAACCCAACTTACTCAGCTTCAAGAGATGGGATTCTTCGACACCCAAGAGAACATACGGGCTCTTATTGCCACATCTGGTAATGTTCATGCAGCTGTTGAACGGCTTTTGGGAAACTCTGGTCAGTAG 1617 0.478 MGGDSAAESPTDSKLSEPVSINIRCSNGSKFSVQISLDSTVGSFKEVVSGSCDIPAEQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPSNTSGGTNTSGTNTATTNTRSTGAAEGGGLGGLGFGASLFPGLGMNGIGGNNPFGEGFPDLDQMQQPFISNPNLMREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMXXXXDRAMSNIEASPEGFNMLRRMYENVQEPFLNATTMAGNTGGNNTPLSGTQARDQSTNPSTTNSEATAGSPLPNTNPLPNPWSSTGTGGAQNNNRRSTPAGGDARQQAPTGLGGLGLPDLQGMLGGNAMPDPALMAQLMQNPAISNMMQSILSNPQTLNQMLGANADQRGMPDLNSLREVMQNPEFLRIFSSPETLQQLMSFQQALMSQIGQQQQSREPGQTGGGTGALNNMAGLELLSSMFGGLGTGSLAVPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00015 538 FunFam Ubiquilin 1 191 246 - -
Stsc241666g00015 538 MobiDBLite consensus disorder prediction 441 461 - -
Stsc241666g00015 538 FunFam Ubiquitin domain-containing protein DSK2b 16 102 - -
Stsc241666g00015 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Stsc241666g00015 538 MobiDBLite consensus disorder prediction 90 117 - -
Stsc241666g00015 538 SUPERFAMILY Ubiquitin-like 12 106 IPR029071 -
Stsc241666g00015 538 CDD Ubl_Dsk2p_like 19 91 - -
Stsc241666g00015 538 FunFam Ubiquitin domain-containing protein DSK2b 479 537 - -
Stsc241666g00015 538 Gene3D - 478 538 - -
Stsc241666g00015 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Stsc241666g00015 538 CDD UBA_PLICs 496 534 - -
Stsc241666g00015 538 SMART uba_6 496 534 IPR015940 -
Stsc241666g00015 538 Gene3D - 189 244 - -
Stsc241666g00015 538 PANTHER UBIQUILIN 14 533 IPR015496 -
Stsc241666g00015 538 SMART CBM 396 431 IPR006636 -
Stsc241666g00015 538 SMART CBM 340 393 IPR006636 -
Stsc241666g00015 538 SMART CBM 194 233 IPR006636 -
Stsc241666g00015 538 SMART CBM 144 181 IPR006636 -
Stsc241666g00015 538 MobiDBLite consensus disorder prediction 262 336 - -
Stsc241666g00015 538 MobiDBLite consensus disorder prediction 90 118 - -
Stsc241666g00015 538 MobiDBLite consensus disorder prediction 262 351 - -
Stsc241666g00015 538 Pfam Ubiquitin family 21 88 IPR000626 GO:0005515
Stsc241666g00015 538 MobiDBLite consensus disorder prediction 441 460 - -
Stsc241666g00015 538 Gene3D - 8 103 - -
Stsc241666g00015 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Stsc241666g00015 538 ProSiteProfiles Ubiquitin domain profile. 19 88 IPR000626 GO:0005515
Stsc241666g00015 538 SMART ubq_7 19 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00015 Stsc-Chr241666 76387 80613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241666g00015 19 88 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.82e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00015 K04523 - gmx:100776447 815.839