Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00013 ATGAAGTATAAACATGAAGTTTTTATCAACTTTAGAGGCACTGATGTCCGACATGGTCTGCTCAGCCATGTGACGAAAGATTTGCGCCGTAAGAAGATTGGTTTCTATGTAGATGATGTTAATCTTGAGGCAGGAGATAAAATTTCGTCACTTTTCACGGCAATTGAAGAGTCGCAAATTTTGTTGGTTATATTCTCCAAAGACTATGCTTCTTCAAAGTGGTGTTTGATGGAGCTCGAAAAGATATTGGAGTGTGCTGGAAAAAATGAACAAATTGTTGTGGTACCTGTCTTCTATAAAGTAGATCCAGCAGATGTGAGGTACCAGAGAGGAGATTATGGTGCTGCTTTTGTTGAACATGAAACAAGGGAAGACAAGGTCACGGTACAAAATTGGAAATCTGCTTTAACTAAGGCTGCTGATCTTTCAGGATTTCATTATTCCTTGAATTCTGAGATGGATGAATCGAAACTTGTGGATGATATTGTTGAACACATTTCCAGAAAGCTGAGAAAGTCTTACCCAGGTGAATCAAATGACCTGGTTGGAATTGATAAAAATATTGAATGGGTTAACTCTTTAATGACAAATAATTCAGAAGAAATTATAAAGATTGGAATTTGGGGCATGGGCGGAATCGGTAAGACGACCATTGCTCAATTTGTGTTTGACAAATTTTCTCATCAATATGAGGGCTGCTACTTCTTGGAGAATATAAAAGATGAACTGCAAACTAGTCATTTAAATTATTTAAGAGATGAAGCTGTTTCTAAGCTATTAGGAGAAGAAAATCCTCATATAACTGGTGCTAGCAAGGCAGGTTCCTTTTACATGAGAAGGCTAAGTAAGAAGAAAGTTCTCCTTGTGCTTGATAATGTTAATACTCCAAAGCTTCTAAAAGATTTTCTTGAACCAATCCGCTTCGGACCGGGGAGTAGAGTGATTGTAACTAGCAGACAGAAGCAAGTGTTTACTTCAGGAGTACTATTTGATGAAATACACCATGTCAAGAAATTGAACTTTGAAGAATCCCTTGAACTCTTCTGCTTAAATGCCTTCAATGCAAGCCAACCCAAAAGGGGATTCCAAGAGCTATCTGAAAAGGCAGTTGCTTTTGCCAGGGGCAATCCATTAGCTTTGAAAGTTTTTGGTTCATATTTCCATTCTAAAAGCGAAGACATATGGGAATCTGCCCTGGACAGATTAAAGAAGTATCCTGATCCTGATGGGGAAATTCTACGTGTGTTGAGGTTCAGTTATGATGAACTAGTTGATACAGAAAAAATGATCTTTCTAGATATTGCATTCTTTTTCAAAGGAGATGACAAAGACTATGTCATAAGCCAACTGGATGAACGGAAATTGTATGGAGTTTGTGGAATGGACTCTCTCCAACAGAAAGCTCTTATAGACATTTCAAAGGACAACAAAATACAAATGCATGATTTAATACAAAAAATGGGTTGGCAAATAGTTCGTCAAGAATCTTCTGTTGCCGGAAATCGAAGCCGATTGAATGATCTAGAAGATGTGCGTGGCATACTAAATAGTGACAGGGTAAGATCAAAATATACATTGAAAATATTTGGAATAATACTTGTGTTTATACATTGA 1614 0.3717 MKYKHEVFINFRGTDVRHGLLSHVTKDLRRKKIGFYVDDVNLEAGDKISSLFTAIEESQILLVIFSKDYASSKWCLMELEKILECAGKNEQIVVVPVFYKVDPADVRYQRGDYGAAFVEHETREDKVTVQNWKSALTKAADLSGFHYSLNSEMDESKLVDDIVEHISRKLRKSYPGESNDLVGIDKNIEWVNSLMTNNSEEIIKIGIWGMGGIGKTTIAQFVFDKFSHQYEGCYFLENIKDELQTSHLNYLRDEAVSKLLGEENPHITGASKAGSFYMRRLSKKKVLLVLDNVNTPKLLKDFLEPIRFGPGSRVIVTSRQKQVFTSGVLFDEIHHVKKLNFEESLELFCLNAFNASQPKRGFQELSEKAVAFARGNPLALKVFGSYFHSKSEDIWESALDRLKKYPDPDGEILRVLRFSYDELVDTEKMIFLDIAFFFKGDDKDYVISQLDERKLYGVCGMDSLQQKALIDISKDNKIQMHDLIQKMGWQIVRQESSVAGNRSRLNDLEDVRGILNSDRVRSKYTLKIFGIILVFIH 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00013 537 Pfam NB-ARC domain 192 404 IPR002182 GO:0043531
Stsc241666g00013 537 Gene3D - 170 328 IPR027417 -
Stsc241666g00013 537 SMART till_3 4 142 IPR000157 GO:0007165
Stsc241666g00013 537 Gene3D - 338 424 IPR042197 -
Stsc241666g00013 537 PRINTS Disease resistance protein signature 280 294 - -
Stsc241666g00013 537 PRINTS Disease resistance protein signature 373 387 - -
Stsc241666g00013 537 PRINTS Disease resistance protein signature 204 219 - -
Stsc241666g00013 537 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 172 - -
Stsc241666g00013 537 SUPERFAMILY "Winged helix" DNA-binding domain 411 496 IPR036390 -
Stsc241666g00013 537 ProSiteProfiles TIR domain profile. 3 170 IPR000157 GO:0007165
Stsc241666g00013 537 Gene3D - 1 169 IPR035897 -
Stsc241666g00013 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 434 IPR027417 -
Stsc241666g00013 537 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 510 IPR044974 GO:0006952
Stsc241666g00013 537 Pfam TIR domain 4 180 IPR000157 GO:0007165
Stsc241666g00013 537 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 145 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00013 Stsc-Chr241666 51315 53340 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241666g00013 5 518 WRKY Transcription Factor Family AT4G12020 31.467 4.66e-56 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00013 - - adu:107475985 777.704