Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00007 ATGGGTGGTGGTGGCTCTGATGAAAACATTTCAGGAATTCTTCAAGGAGGGATGATGGATAATCAGAATCAGAGGCAGAATGTTTGTGGAAGAAAGTATGGACAGAACAGAAGAGCATTGAGTGAGATCAATCAGAATCTTGTGCAAGGAAATCGACCTTACCCTTGTGTTGTTAACAAGAGACCTTTGCCTGGAATTCAAGAAATGTCTGAGAAGAAGCAGGTGGATCCGGGGCATCGTCCTATCACAAGGAGGTTTGCTGCTCAAATTGCTTCACAGCAACAGCAGCAATCTTGTGCTGAGTTCACAGCAGATCAACCAGTCCCCATGTCCTTGGAGAAACCAAAATTGGTGCAGGAGGAGATTGAGATGGAGGATATAGTTGAAGAAGAGTCTGTTATAAACATCGATAGCAGCGATGCGGATGATCATCTTGCGGTGGTGGAATACATCGAAGATCTTCATGCACACTACAGAAAGCTTGAGATTTTGAACTGCATCTCGCCGGATTATATGGCGCAACAATTCGACATTAATGAAAGAATGAGGGCTATACTAGTTGACTGGCTAATTGAGGTGCATGACAAATTCAACCTCATGCAAGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTCTTGGCCAAGCAATCAGTTGTAAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTGCCATGCTCTTGGCTTGCAAGTATGAGGAAGTTTCCGTGCCCGTGGTTGGCAATTTGATCCTTATTTCGGATAAAGCTTACACAAGGAAGGATGTTCTGGACATGGAGAAGTTGATGCTCACCACATTGCAGTTCAACATTTCTGTTCCAACTGCATATGTTTTTATGAGAAGATTCCTGAAGGCGGCTCAAGCCGATAAAAAACTTGAGCTGCTTGCTTTCTTCTTGATAGAGCTATCTCTTGTGGAATATGAAATGCTGAAGTTCCCGGCATCTTTGCTAGCTGCGGCCGCTGTCTACACGGCTCAGTGCACTGTCAACGGCTTCAAGCAATGGAACAAGACTTGTGAATGGCACACAAACTACTCAGAAGATCAGATATTCGAGTGCTCTCGGATGATGGTGGGGCTACACCAGAAGGCCGCGACGGCGAAACTCACCGGCGTGCATAGGAAATACAGTTCATCTAGCTATTGCTTTACTGCGAGATGCGAACCGGCATGTTTTCTTCTGGAGAACCAATTCTAG 1221 0.4472 MGGGGSDENISGILQGGMMDNQNQRQNVCGRKYGQNRRALSEINQNLVQGNRPYPCVVNKRPLPGIQEMSEKKQVDPGHRPITRRFAAQIASQQQQQSCAEFTADQPVPMSLEKPKLVQEEIEMEDIVEEESVINIDSSDADDHLAVVEYIEDLHAHYRKLEILNCISPDYMAQQFDINERMRAILVDWLIEVHDKFNLMQETLFLTINLIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGNLILISDKAYTRKDVLDMEKLMLTTLQFNISVPTAYVFMRRFLKAAQADKKLELLAFFLIELSLVEYEMLKFPASLLAAAAVYTAQCTVNGFKQWNKTCEWHTNYSEDQIFECSRMMVGLHQKAATAKLTGVHRKYSSSSYCFTARCEPACFLLENQF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00007 406 SMART Cyclin_C_2 281 398 IPR004367 -
Stsc241666g00007 406 SUPERFAMILY Cyclin-like 280 397 IPR036915 -
Stsc241666g00007 406 Gene3D - 167 279 - -
Stsc241666g00007 406 SMART cyclin_7 188 272 IPR013763 -
Stsc241666g00007 406 SMART cyclin_7 285 367 IPR013763 -
Stsc241666g00007 406 PIRSF Cyclin_A_B_D_E 13 126 IPR046965 GO:0016538|GO:0044772
Stsc241666g00007 406 PIRSF Cyclin_A_B_D_E 111 406 IPR046965 GO:0016538|GO:0044772
Stsc241666g00007 406 Gene3D - 153 389 - -
Stsc241666g00007 406 ProSitePatterns Cyclins signature. 183 214 IPR006671 -
Stsc241666g00007 406 PANTHER CYCLINS 111 385 IPR039361 -
Stsc241666g00007 406 Pfam Cyclin, N-terminal domain 155 279 IPR006671 -
Stsc241666g00007 406 Pfam Cyclin, C-terminal domain 281 394 IPR004367 -
Stsc241666g00007 406 FunFam G2/mitotic-specific cyclin-1 265 393 - -
Stsc241666g00007 406 SUPERFAMILY Cyclin-like 142 278 IPR036915 -
Stsc241666g00007 406 CDD CYCLIN_AtCycB-like_rpt1 130 276 - -
Stsc241666g00007 406 CDD CYCLIN_AtCycB-like_rpt2 281 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00007 Stsc-Chr241666 24215 27374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241666g00007 6 402 Core Cell Cycle Gene Families AT1G20610 52.982 1.16e-154 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00007 K21777 - gmx:100779889 538.11