Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241666g00006 ATGTCCTTGGAGAAACCAAAATTGGTGCAGGAGGAGATTGAGATGGAGGATATAGTTGAAGAAGAGTCTGTTATAAACATCGATAGCAGCGATGCGGATGATCATCTTGCGGTGGTGGAATACATCGAAGATCTTCATGCACACTACAGAAAGCTTGAGATTTTGAACTGCATCTCGCCGGATTATATGGCGCAACAATTCGACATTAATGAAAGAATGAGGGCTATACTAGTTGACTGGCTAATTGAGGTGCATGACAAATTCAACCTCATGCAAGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTCTTGGCCAAGCAATCAGTTGTAAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTGCCATGCTCTTGGCTTGCAAGTATGAGGAAGTTTCCGTGCCCGTGGTTGGCAATTTGATCCTTATTTCGGATAAAGCTTACACAAGGAAGGATGTTCTGGACATGGAGAAGTTGATGCTCACCACATTGCAGTTCAACATTTCTGTTCCAACTGCATATGTTTTTATGAGAAGATTCCTGAAGGCGGCTCAAGCCGATAAAAAACTTGAGCTGCTTGCTTTCTTCTTGATAGAGCTATCTCTTGTGGAATATGAAATGCTGAAGTTCCCGGCATCTTTGCTAGCTGCGGCCGCTGTCTACACGGCTCAGTGCACTGTCAACGGCTTCAAGCAATGGAACAAGACTTGTGAATGGCACACAAACTACTCAGAAGATCAGATATTCGAGTGCTCTCGGATGATGGTGGGGCTACACCAGAAGGCCGCGACGGCGAAACTCACCGGCGTGCATAGGAAATACAGTTCATCTAGCTATTGCTTTACTGCGAGATGCGAACCGGCATGTTTTCTTCTGGAGAACCAATTCTAG 894 0.4452 MSLEKPKLVQEEIEMEDIVEEESVINIDSSDADDHLAVVEYIEDLHAHYRKLEILNCISPDYMAQQFDINERMRAILVDWLIEVHDKFNLMQETLFLTINLIDRFLAKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGNLILISDKAYTRKDVLDMEKLMLTTLQFNISVPTAYVFMRRFLKAAQADKKLELLAFFLIELSLVEYEMLKFPASLLAAAAVYTAQCTVNGFKQWNKTCEWHTNYSEDQIFECSRMMVGLHQKAATAKLTGVHRKYSSSSYCFTARCEPACFLLENQF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241666g00006 297 Pfam Cyclin, N-terminal domain 46 170 IPR006671 -
Stsc241666g00006 297 SUPERFAMILY Cyclin-like 171 288 IPR036915 -
Stsc241666g00006 297 SMART Cyclin_C_2 172 289 IPR004367 -
Stsc241666g00006 297 SMART cyclin_7 79 163 IPR013763 -
Stsc241666g00006 297 SMART cyclin_7 176 258 IPR013763 -
Stsc241666g00006 297 CDD CYCLIN_AtCycB-like_rpt1 21 167 - -
Stsc241666g00006 297 Gene3D - 58 170 - -
Stsc241666g00006 297 CDD CYCLIN_AtCycB-like_rpt2 172 288 - -
Stsc241666g00006 297 ProSitePatterns Cyclins signature. 74 105 IPR006671 -
Stsc241666g00006 297 Gene3D - 44 280 - -
Stsc241666g00006 297 PANTHER CYCLINS 31 276 IPR039361 -
Stsc241666g00006 297 PIRSF Cyclin_A_B_D_E 4 297 IPR046965 GO:0016538|GO:0044772
Stsc241666g00006 297 SUPERFAMILY Cyclin-like 33 169 IPR036915 -
Stsc241666g00006 297 FunFam G2/mitotic-specific cyclin-1 149 284 - -
Stsc241666g00006 297 Pfam Cyclin, C-terminal domain 172 285 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241666g00006 Stsc-Chr241666 24168 26277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241666g00006 3 293 Core Cell Cycle Gene Families AT1G20610 65.753 6.49e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241666g00006 K21777 - gmx:100779889 458.373