Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc241665g00038 | ATGTCAAGCAGCAGGAACACTCATTGGTGTTACAGTTGCAGGAGGCCAGTTCGACTAGGACGGCGAGATGTGGTTTGCCCTAGCTGCAATGAGGGATTTATTCAGGAACTTAACGATATGGTGCATGTTAACCCTCTAGAATTCTTTGGACTAGATAACAATGAAGAGCATGACCAAAGGTTTGGACTTATGGAAACTTTCTCTGCCTTTATGAGGCAGCGAGTGGCCGACAGAAGTCATAGCCATGATATCAGGGCACGATCAAATCCTATTTCGGAACATGGTCCAGGTTTTGCTCCTTTATTGATATTTGGTGGTCAGATTCCTTTTAGATTATCTGGACATGGTGGTTTCGAGGCTCTCTTTAACGGGACTCCTGGTATTGGTCTTACCCGGGGCAACACAGGCGATTATTTCATTGGTCCTGGACTTGAAGAACTGTTTGAACAGCTCTCAGCTAATACTCGGCAAGGGCCTCCACCAGCATCCAGATCCTCTATAGAGGCAATGCCTACTATCAAAATTACACAGAGGCATCTTCGTTTGGATTCACATTGTCCGGTGTGCAAAGATAAATTTGAGGTGGGGACTGAAGCAAGACAAATGCCATGTAACCATATGTACCACTCAGATTGTATTGTTCCATGGCTGATACAGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCGCCACAAGGATTGAGCAGTAGCCGAGGCTCGAATAGCCGAAGTAGAAGCGCCTTTAGTGGCAGTAGCAGCGGCAGGAGTGGAAGGGAGAACCAGGGAAGGCGAAATCCATTCTCATTTTTGTGGCCTTTCCGTGGTTCTAATTCTAGCAGCAATGATAGAGCAACCGGAAGCAGCTCGCCAACACCATCATTCCCTGATAGTAGTCATCACTCGGAGTATTCTGGGTGGCCATTTGAATGA | 933 | 0.4695 | MSSSRNTHWCYSCRRPVRLGRRDVVCPSCNEGFIQELNDMVHVNPLEFFGLDNNEEHDQRFGLMETFSAFMRQRVADRSHSHDIRARSNPISEHGPGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGIGLTRGNTGDYFIGPGLEELFEQLSANTRQGPPPASRSSIEAMPTIKITQRHLRLDSHCPVCKDKFEVGTEARQMPCNHMYHSDCIVPWLIQHNSCPVCRQELPPQGLSSSRGSNSRSRSAFSGSSSGRSGRENQGRRNPFSFLWPFRGSNSSSNDRATGSSSPTPSFPDSSHHSEYSGWPFE | 310 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc241665g00038 | 310 | Pfam | zinc-ribbon | 6 | 37 | IPR039525 | GO:0061630 | |
Stsc241665g00038 | 310 | SMART | ring_2 | 186 | 226 | IPR001841 | - | |
Stsc241665g00038 | 310 | MobiDBLite | consensus disorder prediction | 232 | 264 | - | - | |
Stsc241665g00038 | 310 | MobiDBLite | consensus disorder prediction | 232 | 310 | - | - | |
Stsc241665g00038 | 310 | SUPERFAMILY | RING/U-box | 166 | 233 | - | - | |
Stsc241665g00038 | 310 | ProSiteProfiles | Zinc finger RING-type profile. | 186 | 227 | IPR001841 | - | |
Stsc241665g00038 | 310 | MobiDBLite | consensus disorder prediction | 272 | 301 | - | - | |
Stsc241665g00038 | 310 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 81 | 231 | - | - | |
Stsc241665g00038 | 310 | FunFam | E3 ubiquitin-protein ligase RING1-like | 149 | 233 | - | - | |
Stsc241665g00038 | 310 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 233 | IPR013083 | - | |
Stsc241665g00038 | 310 | CDD | RING-H2_RNF126-like | 186 | 227 | - | - | |
Stsc241665g00038 | 310 | Pfam | Ring finger domain | 185 | 227 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc241665g00038 | Stsc-Chr241665 | 277749 | 280259 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc241665g00038 | 121 | 231 | C3H Transcription Factor Family | AT5G01980 | 43.478 | 3.91e-27 | 108 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc241665g00038 | K11982 | - | gmx:100787523 | 519.235 |