Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241665g00009 ATGAATTCAACGGCGTCACTGGATCACTGGAGGAGTTACTTCAAGAAATCGAATTCCGACATATTCAGCATCATTGACAACGCCATCATGGTTGCCGCTTCTGATTGCCCCATGGAGTTCAGGCTCCGCCGTGACGCCATTGCCGAGCGCCTCTTCTCCTGCAGGCTCTCGCGGTGCTGTGGATGTGACCGAGTTGAGCTCGCCGTCGATGGAGGCGGCGGCAAAGATGGTGGTGGCTGCCGCAAGAGCGGTGAGTCCGAGGTGGAGACGGGTGGGAGTAAAGAGAGCAAAGTCAACAGCAGCAGAGATGAGAGGGGAGAGGTGAATATTCAGATAGTGAGCAATTACAGTTATGGGGAAGCAGAGGCGTTGACGGATGAGATTGAAGAACAATCTCAGTATGCTGATGAGGTCTTCAGGATCAGACAGGTTTTGCTTAATTCTCAAGAAGAGTCTGATACAGTGTTATTTGAGTCGTTGCGGAGGCTTCAGCTGATGGATCTCACTGTGGATCTTCTGAAGGCCACTGAGATTGGAAAGGCTGTTACTCCTCTTCGAAAGCATGGCTTGAAGGATATTCGGCAACTTGCACGGACACTTATCGATGGCTGGAAAGTTATGGTGGATGAGTGGGTCAAGGCTACTACTTCTATCACAGGTTCAGAAGGTACCCCAGATTCAGTAAACCCATCTGTAGTTGATGAAGAAGAAGGGCTTCCATCACCACCCATGGATGAAGGGGCTTTCTTTGCCACTCAAGCCGGTTCAATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATTACGGAAATCCTCAACAGAGTGGGGAATTCATCAAGAACCGTGAAAGTGGCAGAAGGGCATCACTGGATAATAAAAATATGGTAAAGATGAACATTCAGGCTTCAACCGACAACTCAAACACAGACAGTAAGCATCAGCTAGCAATTAAACATGCCGCTACTGGGAAGCTAAGTCAGCCGGTAAGCACTGATTCTGGCCCAGGAAGACCACCAAAATCTACTGTGCTGAAAAAAGGGGCTGTGGAACCTAAGATGCCTCAAAAGATAGAGACAAGTGTCATCCGAAAGCAGCCTCAGGCTGGTCATCAGAATAAATCCAAGCCTTTGGGTGATTCTTCATTGCAAGTGAAGTTAGAAGCTGCTAAGAGAAAACTTCAGGAGCGGTATCAACAAGCTGAAAATGCTAAGAGGCAGCGAACGGTGCAGGTTATGGAGTTGCACGACCTGCCCAAGCAGGCAGTTGCGCACCGGAATCCACAAGTGAAGCCTGGAATTCATAAGAGGAAATTGAATAACGGACAAAGATAG 1332 0.4857 MNSTASLDHWRSYFKKSNSDIFSIIDNAIMVAASDCPMEFRLRRDAIAERLFSCRLSRCCGCDRVELAVDGGGGKDGGGCRKSGESEVETGGSKESKVNSSRDERGEVNIQIVSNYSYGEAEALTDEIEEQSQYADEVFRIRQVLLNSQEESDTVLFESLRRLQLMDLTVDLLKATEIGKAVTPLRKHGLKDIRQLARTLIDGWKVMVDEWVKATTSITGSEGTPDSVNPSVVDEEEGLPSPPMDEGAFFATQAGSMELSQFFDGMDDYGNPQQSGEFIKNRESGRRASLDNKNMVKMNIQASTDNSNTDSKHQLAIKHAATGKLSQPVSTDSGPGRPPKSTVLKKGAVEPKMPQKIETSVIRKQPQAGHQNKSKPLGDSSLQVKLEAAKRKLQERYQQAENAKRQRTVQVMELHDLPKQAVAHRNPQVKPGIHKRKLNNGQR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241665g00009 443 MobiDBLite consensus disorder prediction 416 443 - -
Stsc241665g00009 443 MobiDBLite consensus disorder prediction 76 104 - -
Stsc241665g00009 443 Pfam TFIIS helical bundle-like domain 160 208 IPR017923 -
Stsc241665g00009 443 SMART TFS2_5 135 210 IPR003617 GO:0005634
Stsc241665g00009 443 MobiDBLite consensus disorder prediction 360 379 - -
Stsc241665g00009 443 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 222 IPR035441 -
Stsc241665g00009 443 CDD TFIIS_I 135 209 - -
Stsc241665g00009 443 MobiDBLite consensus disorder prediction 321 382 - -
Stsc241665g00009 443 MobiDBLite consensus disorder prediction 80 104 - -
Stsc241665g00009 443 ProSiteProfiles TFIIS N-terminal domain profile. 136 211 IPR017923 -
Stsc241665g00009 443 Coils Coil 383 410 - -
Stsc241665g00009 443 MobiDBLite consensus disorder prediction 218 241 - -
Stsc241665g00009 443 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 220 IPR035441 -
Stsc241665g00009 443 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 430 IPR044805 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241665g00009 Stsc-Chr241665 26419 29819 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc241665g00009 Med26 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241665g00009 - - aip:107625382 742.265