Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241665g00008 ATGAATTCAACGGCGTCACTGGATCACTGGAGGAGTTACTTCAAGAAATCGAATTCCGACATATTCAGCATCATTGACAACGCCATCATGGTTGCCGCTTCTGATTGCCCCATGGAGTTCAGGCTCCGCCGTGACGCCATTGCCGAGCGCCTCTTCTCCTGCAGGCTCTCGCGGTGCTGTGGATGTGACCGAGTTGAGCTCGCCGTCGATGGAGGCGGCGGCAAAGATGGTGGTGGCTGCCGCAAGAGCGGTGAGTCCGAGGTGGAGACGGGTGGGAGTAAAGAGAGCAAAGTCAACAGCAGCAGAGATGAGAGGGGAGAGGTGAATATTCAGATAGTGAGCAATTACAGTTATGGGGAAGCAGAGGCGTTGACGGATGAGATTGAAGAACAATCTCAGTATGCTGATGAGGTCTTCAGGATCAGACAGGTTTTGCTTAATTCTCAAGAAGAGTCTGATACAGTGTTATTTGAGTCGTTGCGGAGGCTTCAGCTGATGGATCTCACTGTGGATCTTCTGAAGGCCACTGAGATTGGAAAGGCTGTTACTCCTCTTCGAAAGCATGGCTTGAAGGATATTCGGCAACTTGCACGGACACTTATCGATGGCTGGAAAGTTATGGTGGATGAGTGGGTCAAGGCTACTACTTCTATCACAGGTTCAGAAGGTACCCCAGATTCAGTAAACCCATCTGTAGTTGATGAAGAAGAAGGGCTTCCATCACCACCCATGGATGAAGGGGCTTTCTTTGCCACTCAAGCCGGTTCAATGGAACTCTCCCAGTTCTTTGATGGCATGGATGATTACGGAAGTGAGTTAACTTTGCCGTTTCTCATGCTTTGTCTAGCTTGCTTTTGCTCTTCGGTTCTTTATTTGAATTCCCCACTTCTTAAGATTGATGATTATGAATGGGAACGATATTTCAGATCCTCAACAGAGTGGGGAATTCATCAAGAACCGTGA 963 0.486 MNSTASLDHWRSYFKKSNSDIFSIIDNAIMVAASDCPMEFRLRRDAIAERLFSCRLSRCCGCDRVELAVDGGGGKDGGGCRKSGESEVETGGSKESKVNSSRDERGEVNIQIVSNYSYGEAEALTDEIEEQSQYADEVFRIRQVLLNSQEESDTVLFESLRRLQLMDLTVDLLKATEIGKAVTPLRKHGLKDIRQLARTLIDGWKVMVDEWVKATTSITGSEGTPDSVNPSVVDEEEGLPSPPMDEGAFFATQAGSMELSQFFDGMDDYGSELTLPFLMLCLACFCSSVLYLNSPLLKIDDYEWERYFRSSTEWGIHQEP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241665g00008 320 MobiDBLite consensus disorder prediction 80 104 - -
Stsc241665g00008 320 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 220 IPR035441 -
Stsc241665g00008 320 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 131 222 IPR035441 -
Stsc241665g00008 320 MobiDBLite consensus disorder prediction 76 104 - -
Stsc241665g00008 320 ProSiteProfiles TFIIS N-terminal domain profile. 136 211 IPR017923 -
Stsc241665g00008 320 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 270 IPR044805 -
Stsc241665g00008 320 SMART TFS2_5 135 210 IPR003617 GO:0005634
Stsc241665g00008 320 Pfam TFIIS helical bundle-like domain 160 208 IPR017923 -
Stsc241665g00008 320 CDD TFIIS_I 135 209 - -
Stsc241665g00008 320 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241665g00008 Stsc-Chr241665 26419 29819 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Stsc241665g00008 Med26 7.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241665g00008 - - aip:107625382 479.174