Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241664g00031 ATGGCAGGTCCTATCCTTCTTCGTTCTCTCTGCTCTTCCACTAGAAAATCCGCATCTTCCTTTTACCGTTCCTCTTCTCCTTCCCTTTATTCTTCTTTTACATCTTCTTCTTCTTCTTCTTCTAGATCCTTCCTCCACCGATTCAGTTACTTCTCACGCGCCTTCTCTGCCGCCGCTCCTGCCTCTTCCGCCGCCACATCTGCAACTTCCCCCGGCGGCGCACTTGACCCCAGCCGCCTCCGCAACGTTGCTGTCATTGCGCACGTCGACCATGGCAAGACCACGCTCATGGATCGCCTTCTCCGCCAGTGCGGCGCCGATATCCCACATGAGCGCGCCATGGATTCCATCACGCTTGAGCGCGAGCGTGGAATCACCATCGCCTCCAAGGTTACGTCCATTTCGTGGAAAGAGAATGAGCTGAACATGGTTGATACTCCAGGACATGCTGATTTTGGTGGCGAAGTTGAACGTGTCGTCGGTATGGTTGAAGGGGCCGTTTTGGTTGTTGATGCCGGTGAAGGTCCACTTGCTCAAACAAAATTCGTTCTTGCTAAAGCCTTAAAGTATGGATTGCGACCTATTCTTCTACTAAACAAAGTTGACCGCCCTGCAGTTACTGAGGAAATGTGTGATGAAGTTGAGAGCCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAGCAACTAGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCTACCACGTATACCAAGGATCCTCCTGCTGAGGCAAAAAATATGTCAGAATTGCTTGATGCCATTGTTTCACATGTCCCACCACCAAATGCAAACACCGATGCACCTTTCCAAATGCTGGTTTCAATGATGGAAAAGGACTTCTATCTTGGTCGAATTTTAACCGGACGCATATATACTGGTGTTGTTCGTGTTGGTGACAGGGTTCATGGATTACGTAATAAGGACTCTGTTGCTGAAAAGATTGAAGATGGAAAGGTGGTGAAACTGATGAAAAAGAAGGGCACGAACATGGTTCTAACAGAATATGCTGGAGCTGGTGATATAATTTCAATAGCTGGCTTGGCAACTCCATCAATAGGCCACACAGTGGCAACAGCAGAGGTTATGTCTGTATTACCCACAGTTGAATTAGATCCTCCTACAATTTCCATGACTTTTGGTGTAAATGACTCCCCATTGGCTGGTCGAGATGGTACTCATTTGACTGGAGGAAGAATTGGTGATCGACTGATGGCTGAAGCTGAAACCAACCTTGCCATAAATGTGCTTCCTGGCTTATCAGAATCATTTGAGGTTCAGGGAAGAGGAGAGCTACAGCTGGGTATCCTGATTGAGAACATGAGACGCGAGGGATTTGAATTATCTGTGTCTCCACCTAAAGTGATGTATAAAACTGAAAATGGTCAGAGACTTGAGCCAATAGAAGAAGTGATAATTGAGGTAAATGATGAGCATGTTGGATTGGTAATGGAAGCCTTGTCTCACAGGCGAGCTGAGGTCACGGACATGGGTCCTGTGTCAGGAGCTGTTGGTCGGACTAGACTGACTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGTAGTGACACTCGTGGAACTGGATTCATGCATCGAGCTTTCCTATCATATGAAAAATTTCGAGGACCTCTTGGCAATGTTAGAAAAGGAGTACTGGTCTCAATGGGGTTTGGTACAACCACTGCTCATGCATTGATGAGCTTAGAAGCACGTGGGATTCTTTTTGTATCTCCTGGAATGGAGGCATATGATGGGATGATTGTTGGAGAACATTCACGAGACACAGATCTTGATGTCAATCCGGTGAGAGCTAAAGAGCTTACAAATATTCGTGCTGCTACCAAGGATGAGAATGTGAAGCTGTCTCCCCCACGTCTTATGACGCTTGAAGAAGCTATAGGTTATGTGGCTTCTGATGAGCTTATTGAGGTTACCCCAAAGGCCATCCGGTTACGGAAGAAATATCTTGATGTTAACAAGCGCAAGGCCATGAGCAAAAAGCCAAAGGAATGA 2067 0.4673 MAGPILLRSLCSSTRKSASSFYRSSSPSLYSSFTSSSSSSSRSFLHRFSYFSRAFSAAAPASSAATSATSPGGALDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSITLERERGITIASKVTSISWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVTEEMCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTYTKDPPAEAKNMSELLDAIVSHVPPPNANTDAPFQMLVSMMEKDFYLGRILTGRIYTGVVRVGDRVHGLRNKDSVAEKIEDGKVVKLMKKKGTNMVLTEYAGAGDIISIAGLATPSIGHTVATAEVMSVLPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGRIGDRLMAEAETNLAINVLPGLSESFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGQRLEPIEEVIIEVNDEHVGLVMEALSHRRAEVTDMGPVSGAVGRTRLTLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLSYEKFRGPLGNVRKGVLVSMGFGTTTAHALMSLEARGILFVSPGMEAYDGMIVGEHSRDTDLDVNPVRAKELTNIRAATKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKAMSKKPKE 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241664g00031 688 Gene3D - 470 564 - -
Stsc241664g00031 688 SUPERFAMILY EF-G C-terminal domain-like 385 468 IPR035647 -
Stsc241664g00031 688 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 78 276 IPR000795 GO:0003924|GO:0005525
Stsc241664g00031 688 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 77 250 - -
Stsc241664g00031 688 FunFam Elongation factor family protein 277 381 - -
Stsc241664g00031 688 Pfam Elongation factor Tu GTP binding domain 79 273 IPR000795 GO:0003924|GO:0005525
Stsc241664g00031 688 SUPERFAMILY EF-G C-terminal domain-like 479 595 IPR035647 -
Stsc241664g00031 688 Gene3D Elongation Factor G (Translational Gtpase), domain 3 388 672 - -
Stsc241664g00031 688 NCBIfam small GTP-binding protein domain 81 218 IPR005225 GO:0005525
Stsc241664g00031 688 FunFam GTP-binding protein TypA 388 497 - -
Stsc241664g00031 688 FunFam GTP-binding protein TypA 79 276 - -
Stsc241664g00031 688 FunFam GTP-binding protein TypA 470 564 - -
Stsc241664g00031 688 Pfam Elongation factor Tu domain 2 297 370 IPR004161 GO:0005525
Stsc241664g00031 688 SUPERFAMILY Translation proteins 225 380 IPR009000 -
Stsc241664g00031 688 CDD BipA_TypA_C 479 559 IPR035651 -
Stsc241664g00031 688 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 115 130 IPR031157 -
Stsc241664g00031 688 CDD TypA_BipA 80 275 IPR047041 -
Stsc241664g00031 688 Gene3D Translation factors 277 381 - -
Stsc241664g00031 688 PRINTS GTP-binding elongation factor signature 122 130 IPR000795 GO:0003924|GO:0005525
Stsc241664g00031 688 PRINTS GTP-binding elongation factor signature 158 169 IPR000795 GO:0003924|GO:0005525
Stsc241664g00031 688 PRINTS GTP-binding elongation factor signature 142 152 IPR000795 GO:0003924|GO:0005525
Stsc241664g00031 688 PRINTS GTP-binding elongation factor signature 194 203 IPR000795 GO:0003924|GO:0005525
Stsc241664g00031 688 PRINTS GTP-binding elongation factor signature 82 95 IPR000795 GO:0003924|GO:0005525
Stsc241664g00031 688 CDD BipA_III 387 464 IPR047043 -
Stsc241664g00031 688 Pfam Elongation factor G C-terminus 478 560 IPR000640 -
Stsc241664g00031 688 MobiDBLite consensus disorder prediction 20 40 - -
Stsc241664g00031 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 285 IPR027417 -
Stsc241664g00031 688 FunFam GTP-binding protein TypA 565 651 - -
Stsc241664g00031 688 NCBIfam translational GTPase TypA/BipA 80 680 IPR006298 GO:0003924|GO:0005525
Stsc241664g00031 688 CDD BipA_TypA_II 283 380 IPR047042 -
Stsc241664g00031 688 Gene3D - 78 276 IPR027417 -
Stsc241664g00031 688 Gene3D bipa protein 565 680 IPR042116 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241664g00031 Stsc-Chr241664 223679 234076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241664g00031 79 203 Eukaryotic Initiation Factors Gene Family AT3G22980 42.748 2.07e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241664g00031 K06207 - gmx:100789218 1137.87