Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241663g00035 ATGGATGTTGTTGAAGTTGAAGAAAATCTTTTTGCAGCAAGTGATGCCAAGTTACATGGAGAAATGTGCAAGACTCTTTCTGCAATATATTGTAAAATATTGACAATATTTCCTTCCCTAGAAGCAGCTAGGCCTAGGAGCAAATCAGGAATACAGGCATTATGTTCACTGCATGTAGCTTTAGAGAAGTCGAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACCTGGCGATAACTGGGGACTCTGTTCTTCTAAAATTTGAAAAGGCTAAGTCTGCACTTATTGACAGTCTTATACTGGTGGAAGATATCGTTCCTCAGTCTATTGGGTGTCAGGTTGAGAAAATTGTGGATGAACTCACAAATACGGTTTTTGCAATTGATCCCTCAGAGAAACAAGTTGGCGATGATTTAATAGCATTGCTTCAGCAGGGGAGGAAGCTTGACAACTCTAATGACTGTAGCGAACTTGAATGTTTTCATCAGGCCGCTACTAGACTCGGAATTACGTCTTCAAGAACGGCTCTTACTGAAAGAAGAGCTCTCAAAAAACTCATTGAAAGGGCTCGGGCTGAGGAGGACAAGCGGAAGGAATCAATTATTGCATATCTTTTACACCTCATGAGGAAATATTCTAAGTTGTTTAGAAGTGAGTTTTCAGATGATAATGATTCTCAAGGCTCCCAACCGTGTTCACCGACTGTTAATGGATCTGTTGAGGATAGTGTTCAGACTCAAGCATTTGATAGAGTGTTTTCAAGACTTAGTTCCTTTAACTTTAAGCCGAATAATAGCAAATCAGGTCAGATGCCCCTTCCCCCTGAAGAGTTGAGTGATGGGCATAACACCTGCCCAAAGACTCAACAGAAACTTCCACATCTTTTTTTGACTCCTAATTACAACGTAAAGAATCTTGTAGCTGGTTGGTGTGCACGGCATGGAGTTCCTATTCCGGAAGGCCCTCCTGAGTCTCTTGATTTTAACTATTGGAGATTGGCTTTATCAGATACTGATTCTACAAATTCAAAATCTGTAAACAGTGTAAATTCCTGCAAGTTGAAAGGTGTCAAAGTGGTTCCAGTAGAAGAAAGCGGCATGTCAGAGCAAACTGGGGTAGCTGATGTCGAAAATGGGTCTACCCAAGAGGATGATACCAAGCAGTATCTTAGTTTCCTGAAAGTCTTAATTGAAGGGAGCAACTTTCAGGGGAAGAGTAAGGTTGTACAAAGTTTAAGGATGTTGCTAAGGGATGATGAGGATGCTAGGACATTTATGGGCACCAATGGATTTGTTGAAGCACTTATACAGTTTCTCCAATCCGCTTTGAATGAAGGAAATACGACGGATCAAGAAAATGGAGCCATGGCCCTGTTCAACCTAGCAGTGAATAATGACAGAAACAAGGAAATGATGATATCCGCCGGAATCTTACCCTTGTTGGACGAAATGATCTATAAACCTACTTGCCATGGCTGTGCAACTGCCCTCTATCTAAATCTCTCTTGCTTTGAAGAAGCCAAGCCTGTCATTGGTTCGGGTCAGGCCGTTCCATTCCTAGTCAAGATTCTTAAATCCAGTTCTGATGTCCAATGCAAGCTTGATTCTCTTCATGCACTCTATAATCTTTCTACTGTATCCACCAACATTCCATACCTACTTTCATCTGGAATCATAGATGGCTTGCAATCCCAGCTTGTAGGCCAGGGTGACAGCGTGTGGACCGAAAAATGCATAGCTGTATTGATAAATTTAGCGGTTTCTCCTTTGGGTAGAGAGGAAATAATGTTGTCTCCTGGAATCATAAGCACATTGGCATCGATACTCGACACCGGTGAGCTCCTAGAGCAAGAGCAAGCCATTGCCTGTCTTCTAATTTTGTGTAACCGAAGCAAGAAATGTTGCGAGATGGTCCTTCAAGAAGGGGTCATCCCTGCATTGGTGTCAATATCAGTAAATGGGACGTCAAGAGGCAGACAAAAATCTCAAAAGCTGTTGATGCTCTTCCGAGAGCAGCGACAAGAAGAGCAATCTCCGACGACAAAGCCGCAACGCCAACCAGAAACCAGCAATTCATCTATCGCTAATCCTGAGGTTAAACCACTGTGCAAGACTACATCTAGGAGAAAGGTGGGGAATCCTTTAAGCTTTTTGTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAG 2196 0.423 MDVVEVEENLFAASDAKLHGEMCKTLSAIYCKILTIFPSLEAARPRSKSGIQALCSLHVALEKSKNVLQHCSECSKLYLAITGDSVLLKFEKAKSALIDSLILVEDIVPQSIGCQVEKIVDELTNTVFAIDPSEKQVGDDLIALLQQGRKLDNSNDCSELECFHQAATRLGITSSRTALTERRALKKLIERARAEEDKRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVNGSVEDSVQTQAFDRVFSRLSSFNFKPNNSKSGQMPLPPEELSDGHNTCPKTQQKLPHLFLTPNYNVKNLVAGWCARHGVPIPEGPPESLDFNYWRLALSDTDSTNSKSVNSVNSCKLKGVKVVPVEESGMSEQTGVADVENGSTQEDDTKQYLSFLKVLIEGSNFQGKSKVVQSLRMLLRDDEDARTFMGTNGFVEALIQFLQSALNEGNTTDQENGAMALFNLAVNNDRNKEMMISAGILPLLDEMIYKPTCHGCATALYLNLSCFEEAKPVIGSGQAVPFLVKILKSSSDVQCKLDSLHALYNLSTVSTNIPYLLSSGIIDGLQSQLVGQGDSVWTEKCIAVLINLAVSPLGREEIMLSPGIISTLASILDTGELLEQEQAIACLLILCNRSKKCCEMVLQEGVIPALVSISVNGTSRGRQKSQKLLMLFREQRQEEQSPTTKPQRQPETSNSSIANPEVKPLCKTTSRRKVGNPLSFLWKSKSYSVYQC 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241663g00035 731 MobiDBLite consensus disorder prediction 674 701 - -
Stsc241663g00035 731 MobiDBLite consensus disorder prediction 262 283 - -
Stsc241663g00035 731 SUPERFAMILY RING/U-box 281 321 - -
Stsc241663g00035 731 MobiDBLite consensus disorder prediction 222 243 - -
Stsc241663g00035 731 Gene3D - 377 685 IPR011989 -
Stsc241663g00035 731 ProSiteProfiles U-box domain profile. 280 319 IPR003613 GO:0004842|GO:0016567
Stsc241663g00035 731 Coils Coil 175 195 - -
Stsc241663g00035 731 SMART arm_5 506 547 IPR000225 GO:0005515
Stsc241663g00035 731 SMART arm_5 421 465 IPR000225 GO:0005515
Stsc241663g00035 731 SMART arm_5 466 505 IPR000225 GO:0005515
Stsc241663g00035 731 SMART arm_5 590 631 IPR000225 GO:0005515
Stsc241663g00035 731 PANTHER U BOX DOMAIN-CONTAINING 21 675 - -
Stsc241663g00035 731 SUPERFAMILY ARM repeat 393 674 IPR016024 -
Stsc241663g00035 731 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 478 IPR000225 GO:0005515
Stsc241663g00035 731 MobiDBLite consensus disorder prediction 681 701 - -
Stsc241663g00035 731 MobiDBLite consensus disorder prediction 224 243 - -
Stsc241663g00035 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 319 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241663g00035 Stsc-Chr241663 290567 294289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241663g00035 1 730 U-box Gene Family AT1G24330 61.032 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241663g00035 - - adu:107478647 1122.84