Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241663g00018 ATGGAAGAGGAAATCAAGTCAGAATTCAGAAAAGCCGGCTTCAACCTTGACGACGACGAAGAAGAAATACTGAACAAGTGTATGGCTTTCTGCATCAACTACAGCCTCAGCCCTTCAGATCTCGTCTCAAACTGGGAGGTTTATTACCTCAACAGGATCTTAAATAATGATGATGATGCTAAGTTTAGTGCTCCCGGGACTCCAACAAATCATCATGAAGATCTCCATTCACCTGCACGTGAAGCAATGTCTCTAACAAATGGGAATATTTTATCTTCTGGAAAACCAACTGAGCTAGTGACACCATTTTCAAAGCGAACTGATAGGTTCTCCGTGAAATTTAGCATCAACACAGTGCCTGATACAGAGAATGAAAAACAAGCGCCGGATCATGAGAGTGATGAAGATGATGTTATTAGGAAAGTTAAGCCCTGTAAAAGGTGTTCCTTGGTGGTTCATGGATCAGGGCCCAAACCTGGTTGCAGATTCATGCATGATAGGACTGAGGATAGGATGAATGTAATAGAAAATCGAATTCGCAAACATACAAGGGCACTTGTTGCTTCTGGGCTTTATGGAGAACCAACAGACCCTACAATTGCTTCACAGAGAAGCATTTTTGCTGTCGGCATGATTTGCTGTGATGCAGAAGGCCGTCTAAATGACAAGTCTGTCATGCTTCAGGGCAGTGTTGAGCATTCTGGAGGGGAATGTGTTCGTCTAGACTTGCAACGCTTAAGCCATTTTTCAATTTTTCCGGGTCAGGTAGTTGGTATTGAAGGGCACAATCCTAGTGGGCATTGCTTAGTTGCATCTAAATTGGTAGATTCTATACCACCTTCCTCTGTTGCTGATGATGAGGATTTGAATCCAGCAAAGAAGCTAGCTATTGATAAAAGTCAATCAATTGATATTCCTTCCAAAGAGACAGAGCTGTCCATGTTGGGACCATTTGTTGATTCTGAACACCCCAACATTAAGAAAGGAACTGTTGACAAGACCTTTGATGAAATATTTCATAACGACATCCTGAGCAAGTTACAGGATTATGCAGAATGTATGGGTTCTGCTGCACGAGTTCTTCTTGTACCATCTATACGAGATGCTAATCATGATTTTGTTTTCCCTCAGCCTGAACTGGATATTAATCTTCCTGATCTCAAATCTCAGATAATCAGTCTCACTAATCCTGGAATCTTTGAGGCAAATGAGGTCAAAGTTGGTTGCTGCAGTGTAGATATTCTCAAGCAGGTCAGTGGGGAAGAGATATCACGAACTGCGCCAGGTGGACAACCTATTGATCGCTTGAGTAGGCTTGCAAACCATATTCTTAGCCAACAAAGCTTTTATCCGCTTTATCCACCGGCAGAAGGTGTTCCTTTGGATTTTTCTCTTGCACCAGAAGCCCTTCAACTCCCATTGGTTCCAGAACTTCTTATCTTACCGTCGGATATCAAGTACTTTGTCAAGGTGCTTAATGTAGGAAGTGAGGAGACAACGTGCAAGAAATGCATTGCTGTGAATCCAGGAAGACTAGCAAAGGGAGAAGGAGGGGGTACTTTTGTAGAGCTTGATTATCGTGGAGGTTCCGACAAAATTAATGCATCGGTTATTGGCATATGA 1623 0.4251 MEEEIKSEFRKAGFNLDDDEEEILNKCMAFCINYSLSPSDLVSNWEVYYLNRILNNDDDAKFSAPGTPTNHHEDLHSPAREAMSLTNGNILSSGKPTELVTPFSKRTDRFSVKFSINTVPDTENEKQAPDHESDEDDVIRKVKPCKRCSLVVHGSGPKPGCRFMHDRTEDRMNVIENRIRKHTRALVASGLYGEPTDPTIASQRSIFAVGMICCDAEGRLNDKSVMLQGSVEHSGGECVRLDLQRLSHFSIFPGQVVGIEGHNPSGHCLVASKLVDSIPPSSVADDEDLNPAKKLAIDKSQSIDIPSKETELSMLGPFVDSEHPNIKKGTVDKTFDEIFHNDILSKLQDYAECMGSAARVLLVPSIRDANHDFVFPQPELDINLPDLKSQIISLTNPGIFEANEVKVGCCSVDILKQVSGEEISRTAPGGQPIDRLSRLANHILSQQSFYPLYPPAEGVPLDFSLAPEALQLPLVPELLILPSDIKYFVKVLNVGSEETTCKKCIAVNPGRLAKGEGGGTFVELDYRGGSDKINASVIGI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241663g00018 540 Gene3D - 1 57 IPR043034 -
Stsc241663g00018 540 MobiDBLite consensus disorder prediction 118 137 - -
Stsc241663g00018 540 Gene3D - 430 536 - -
Stsc241663g00018 540 Gene3D - 293 426 - -
Stsc241663g00018 540 Coils Coil 165 185 - -
Stsc241663g00018 540 Pfam DNA polymerase alpha/epsilon subunit B 314 490 IPR007185 GO:0003677|GO:0006260
Stsc241663g00018 540 PIRSF DNA_pol_alpha_2 53 307 IPR016722 -
Stsc241663g00018 540 PIRSF DNA_pol_alpha_2 303 535 IPR016722 -
Stsc241663g00018 540 PIRSF DNA_pol_alpha_2 1 62 IPR016722 -
Stsc241663g00018 540 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 55 IPR016722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241663g00018 Stsc-Chr241663 148881 153366 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241663g00018 2 540 Core DNA Replication Machinery Family AT1G67630 50.562 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241663g00018 K02321 - qsa:O6P43_030564 741.88