Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241662g00043 ATGGGGTTCCCACAATATGATTCCCATAATCAAGTTGGTAATCCATCATCCAATTATTTGTTGCCTACTCAACTCTCCATCATCAAGAACAATAATAATGATATGGAGTTCCCTCTTTATCAATCTTCAAAGGAAGGCCTTTTCTTTGATTCAGTTAATGACCAAAATACCCCCAACAACAACAACAACTTTGAGTTGCCAAATACCTTGCAAGCAATAAAATCTCAATTGAATGGTGATCTTCAATGTAATGGATCACCTGAAAAATCTAATAAAATTCCATGTGGGAATTTTCCTCCCAACAATTTCCTTCCAATTGAACAACATAAGTTGTTCATTGATGATGCTGCCCCACTCACTAGGAACATATCAATTCCCAAAGCAAATCAAGAATCTATGGCACAGCTGAATTTCTCATCCCAGCAAGAGAAGCTTTCTCCAACAATTTCGGCCGGAAGCATGTCGACGGCTACTGGCCATGGAAGCCTTGTCTCGAACGGGCCGATAGCCTCGAGTAAAACGCGTATAAGATGGACTCAGGATCTTCATGAGAAGTTTGTTGAATGTGTGAATCGACTAGGAGGCGCAGAAAAGGCAACTCCTAAAGCTATACTAAGGCTGATGGATTCAGATGGATTGACAATCTTCCATGTTAAGAGTCATTTGCAGAAATACAGAATTGCTAAGTATATGCCAGAATCAACTCTCGGGAAATCTGAGAAAAGAACCAATGCAGAGAGTGTGCATCTTGATGTCAAAGCTGGCTTGCAAATTAAAGAGGCACTTCAGCTACAATTGGATGTGCAGAGGCGTCTTCATGAACAGCTAGAGATTCAGAGAAAATTACAGTTGCAAATTGAAGAGCAAGGAAAGCAGCTGAAGATGATGTTTGACAGGCAGCAGAAATCAAATAATATTGAAAATAGTTCTAAATATAATAATAATAATGAGGTTACAATTTTAGAAGGGACTGGAATTTCCTACTTCCCTACAAAGAAAAGTTAG 1005 0.39 MGFPQYDSHNQVGNPSSNYLLPTQLSIIKNNNNDMEFPLYQSSKEGLFFDSVNDQNTPNNNNNFELPNTLQAIKSQLNGDLQCNGSPEKSNKIPCGNFPPNNFLPIEQHKLFIDDAAPLTRNISIPKANQESMAQLNFSSQQEKLSPTISAGSMSTATGHGSLVSNGPIASSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMDSDGLTIFHVKSHLQKYRIAKYMPESTLGKSEKRTNAESVHLDVKAGLQIKEALQLQLDVQRRLHEQLEIQRKLQLQIEEQGKQLKMMFDRQQKSNNIENSSKYNNNNEVTILEGTGISYFPTKKS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241662g00043 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 134 305 IPR044848 GO:0003700
Stsc241662g00043 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 173 228 IPR006447 GO:0003677
Stsc241662g00043 334 Coils Coil 259 279 - -
Stsc241662g00043 334 Gene3D - 172 231 - -
Stsc241662g00043 334 FunFam Myb family transcription factor 172 230 - -
Stsc241662g00043 334 Pfam MYB-CC type transfactor, LHEQLE motif 256 303 IPR025756 -
Stsc241662g00043 334 Pfam Myb-like DNA-binding domain 177 226 IPR001005 -
Stsc241662g00043 334 SUPERFAMILY Homeodomain-like 171 227 IPR009057 -
Stsc241662g00043 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 230 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241662g00043 Stsc-Chr241662 290042 292731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241662g00043 165 300 G2-like Transcription Factor Family AT4G28610 59.712 1.07e-49 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc241662g00043 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241662g00043 - - aip:107619706 504.212