LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241662g00016	ATGCCGCTAGATTCATTGGCGGCACCCCTGCTCCATTGTCAGTGCAGAATCGTCATTCGAGGGAGAAGGAGAGCCGCTAGATTCATTGGCGGCACTGGTGGGATTGGATGTCACTGGTTCTTCTGGCGGCACTGGTTCAATACAATGCTACTGGTTCTTCTGGCGGTATTAGTGTGTTTTAGTGACACCAGTGCCGCCAGTTCTTCCAGCGGCATCCACCTGACGCCATCTAGCGGCACTGGTTCGCCTGATCTACTCCAGTGCCACTGGAACATGTGGCGGCACTCCCTTATTTTAGTGCCACAGGATGGAACTGATAAACTGTGGCTGATCAATGATGTCTCAAACATATACTCCAATGCCCTCCAAGTAACCCCCGATTCGAATTCGATGATTGATCGATCAGGGCGAGCTTTCTACAACAAGCCATTCAGATTATGGAGAAAAAAGAAGAATCGAATTGCAAGCTTCAATTCCACTTTTGTTCTTAACATCAATCCTCACACTTCCCCTGGTGGAGAAGGCTTGGCCTTCATCTTAACCGCCAACACGGCTCTCCCGAACAACAGTTCGGGAGAGTGGCTAGGAATTGTGAACGCCACAACCAATGGAACTTCTGAAGCTGGGATTCTTGCTGTGGAATTTGACACAAGGAAAAGTTTTCCGGAGGATGGCAATGACAACCATGTTGGCATTAACATAAACAGCATCAATTCTATCCAACAAGTCTCATTGTTAAGCAAAGGGATCAATATCTCATCAGGTCTTGATGTAACGATGAGAGTTGAGTATGTTAATTATAGTATATCGGTTTATGGTTACATGACTGATGAAACATCATCACAAGAGTTACTCTTAGTATCTTCACCTCTTAACCTTTCTTCCTATCTTGATGAAGAGGTTTATGTCGGCTTCTCGGCTTCAACAAGTAACTACACCGAGCTGAATTGTGTAAGATCATGGGAGTTCAACGGTGAAGATATTGGTCATGATAACAAGAACCTGTTGTGGGTTTGGATAGCTGTTGCAACCGTGATTGTTATTATGATTGGCGGGGCTGTGGTTTTCTTGATTTGGCGAAGGAAACACGGCGTGGGGAGTCTGGTGGATGCATACCCGAGGATAGAGGATCAGATTCAGCACTCATCCATGGCTCCAAAGAAGTTCCGGTTAAAGGAAATTAAAAAGGCAACAGGTGGATTCAGCCTTCAAAACAAGCTTGGTGAAGGTGGTTTTGGGACAGTTTATAAGGGACTACTCGAAAACAAGGAGATAGCTGTGAAGAGTCACTCGAAGGATTCGCGCCAAGGGAAGCAAGAATTTGTAGCCGAAGTCACAACAATTGGAAGCCTCCACCATAGAAATTTGGTGAAACTGATTGGTTGGTGCTATGAAAGCAGAGAGCTTCTTCTTATTTACGAGTACATGCCTAATGGAAGCCTGGACAAGTACCTATTCGATGAGCAAATTGGAGAAGGAATTAACAATTCAACACTAAACTGGGAAACCAGACGCAGTGTAATATATGGAGTGGCGCAAGCATTAGAGTATCTCCACAACGGTTGTGAGAAGATGGTGCTTCATAGAGACATCAAGGCCAGCAACATAATGTTGGATTCGGAGTTCAATGCAAAGTTAGGAGATTTCGGATTGGCGCGAACTATTCAAAAGAAAAATGAAACTCATCATTCCACAAAGGAGATTGCAGGGACGCCAGGGTACATGGCCCCGGAGACATTCCTCACCGGAAGGGCGACGGTGGAAACCGACGTGTACGCGTTCGGCGTTCTTGTGTTGGAAGTTGTGTGTGGAAGAAGGCCGGGGAATGTGAACGGACAAGATGATTACAGGAACAACATTGCATATTGGGTTTGGGAGCTTCATGGGAAGGGGAGAATAGTGAGTGCTTTGGACAAAAGGATAAGTGATGAAGAGGTGAAGGAAGAAGAAGTTTGTAGTGTTCTAGTTTTGGGGTTGGCTTGTTGCCATCCAAACCCGCACCATAGGCCTTCAATGAGAACTGTTCTGCAAATTCTGAACGGGGAAGCACCGCCGCCAGTGGTGCCTCAAGAGAGGCCTGCTTTTGTGTGGCCTGTTATGCCTCCTCCATCTTTCAGTGAAGGTGTAGATATTTCACTTCTTAATGGACAAATCACTCCAATGTTCACTGAAATTACTTGTCGGTGA	2187	0.4586	MPLDSLAAPLLHCQCRIVIRGRRRAARFIGGTGGIGCHWFFWRHWFNTMLLVLLAVLVCFSDTSAASSSSGIHLTPSSGTGSPDLLQCHWNMWRHSLILVPQDGTDKLWLINDVSNIYSNALQVTPDSNSMIDRSGRAFYNKPFRLWRKKKNRIASFNSTFVLNINPHTSPGGEGLAFILTANTALPNNSSGEWLGIVNATTNGTSEAGILAVEFDTRKSFPEDGNDNHVGININSINSIQQVSLLSKGINISSGLDVTMRVEYVNYSISVYGYMTDETSSQELLLVSSPLNLSSYLDEEVYVGFSASTSNYTELNCVRSWEFNGEDIGHDNKNLLWVWIAVATVIVIMIGGAVVFLIWRRKHGVGSLVDAYPRIEDQIQHSSMAPKKFRLKEIKKATGGFSLQNKLGEGGFGTVYKGLLENKEIAVKSHSKDSRQGKQEFVAEVTTIGSLHHRNLVKLIGWCYESRELLLIYEYMPNGSLDKYLFDEQIGEGINNSTLNWETRRSVIYGVAQALEYLHNGCEKMVLHRDIKASNIMLDSEFNAKLGDFGLARTIQKKNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGRRPGNVNGQDDYRNNIAYWVWELHGKGRIVSALDKRISDEEVKEEEVCSVLVLGLACCHPNPHHRPSMRTVLQILNGEAPPPVVPQERPAFVWPVMPPPSFSEGVDISLLNGQITPMFTEITCR	728

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241662g00016	728	ProSiteProfiles	Protein kinase domain profile.	401	688	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241662g00016	728	SUPERFAMILY	Protein kinase-like (PK-like)	383	679	IPR011009	-
	Stsc241662g00016	728	CDD	lectin_legume_LecRK_Arcelin_ConA	119	324	IPR001220	GO:0030246
	Stsc241662g00016	728	PANTHER	-	120	686	-	-
	Stsc241662g00016	728	CDD	TM_EGFR-like	340	363	-	-
	Stsc241662g00016	728	SUPERFAMILY	Concanavalin A-like lectins/glucanases	105	324	IPR013320	-
	Stsc241662g00016	728	Gene3D	Transferase(Phosphotransferase) domain 1	476	684	-	-
	Stsc241662g00016	728	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	386	475	-	-
	Stsc241662g00016	728	SMART	serkin_6	401	678	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241662g00016	728	Gene3D	-	101	335	-	-
	Stsc241662g00016	728	CDD	STKc_IRAK	407	681	-	-
	Stsc241662g00016	728	Pfam	Legume lectin domain	113	329	IPR001220	GO:0030246
	Stsc241662g00016	728	Gene3D	Phosphorylase Kinase; domain 1	386	475	-	-
	Stsc241662g00016	728	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	526	538	IPR008271	GO:0004672\|GO:0006468
	Stsc241662g00016	728	Pfam	Protein kinase domain	402	677	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc241662g00016	728	ProSitePatterns	Protein kinases ATP-binding region signature.	407	428	IPR017441	GO:0005524
	Stsc241662g00016	728	FunFam	Probable L-type lectin-domain containing receptor kinase S.5	101	332	-	-
	Stsc241662g00016	728	FunFam	probable L-type lectin-domain containing receptor kinase S.5	476	685	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241662g00016	Stsc-Chr241662	83995	87248	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241662g00016	135	697	Receptor kinase-like Gene Family	AT5G55830	37.603	8.75e-118	367

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Stsc241662g00016		Pkinase	8.4e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241662g00016	-		-	gmx:100785031	911.368