Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241661g00030 ATGGTGGTGGCTCCATCAACTACCTTCTTTCGATGCTTATTATCGAGTCTTCCTTCTTCTCCTCACTCTCACAATCTTCCACTCACTCTTCCCTTCCACCGCACCCCACTCTTCCGCTCTCTCCTCCTCCCCTCTCGCCACCGCACACTCTCCCCCGCTCTCGCCGCCGCCAACAACAAGAACAAGAACAAGAGCAACAAAAACAAGAAAAAGTTGTTACGGGGTCGTGGTACAAGGGATAATGATGAGGATGAGGAGGAGGATGCTTTTGAGTTGTTGTTCAAGCAACTTGAAGAGGATCTCAAAAAAGATAATTTGTTGAAAGATGGTAGCAATGACGATGATGACGATGAGATAACTGAAGAGGAACTTGCCTTGTTGGAACGTGAGTTAGAAGGTGCATTGGGGGAATTTGATGCCGAAACCTTAAATCCGGATTTAATTCATGCTGAAACTGATGCTGGTGATAGTGAAGAAGAAGAAGAAGACGAAGAAGATGGTGTGCCTATGCTTAGAACCTGGCAAATGAAGAAATTGGCTAGGGCTTTGAAAGCTGGCCGCAGAAAAACCAGTATCAAAAATCTTGCTGCTGATCTTTGTCTTGATAGGGCTTATGTTATTGAATTGCTCCGCAACCCTCCCCCGAATCTTTTGATGATGAGTTTATCAATTCCTGATGAACCTACACCAAAAGAGATATCTGTTGAGACTAAACCGAGTGATATTGTTCTCGAAGAAACACGTACAGATCCCGTAGAAGCTGGAAACAAGGCCAAGGTACCAGTTCATGTCATGCAACAAAAATGGTCTGCGCAAAAGAGATTGAAAAGGGCCCAAGTTGACACTCTGGAAAAGGTTTATAGGAGATCGAAGCGACCCACTAATGCAATGATAAGTAGTATAGTGCATGTAACCAACATTCCTCGGAGAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAAGAGGGGGTTCCAGAGAATCGTGTTCCTTACCAGCCCTCTGTATCAGAAACTAGTTGA 1023 0.4457 MVVAPSTTFFRCLLSSLPSSPHSHNLPLTLPFHRTPLFRSLLLPSRHRTLSPALAAANNKNKNKSNKNKKKLLRGRGTRDNDEDEEEDAFELLFKQLEEDLKKDNLLKDGSNDDDDDEITEEELALLERELEGALGEFDAETLNPDLIHAETDAGDSEEEEEDEEDGVPMLRTWQMKKLARALKAGRRKTSIKNLAADLCLDRAYVIELLRNPPPNLLMMSLSIPDEPTPKEISVETKPSDIVLEETRTDPVEAGNKAKVPVHVMQQKWSAQKRLKRAQVDTLEKVYRRSKRPTNAMISSIVHVTNIPRRRVVKWFEDKRAEEGVPENRVPYQPSVSETS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241661g00030 340 Gene3D - 271 327 - -
Stsc241661g00030 340 Coils Coil 117 137 - -
Stsc241661g00030 340 ProSiteProfiles 'Homeobox' domain profile. 266 326 IPR001356 GO:0003677
Stsc241661g00030 340 SUPERFAMILY Homeodomain-like 269 332 IPR009057 -
Stsc241661g00030 340 CDD homeodomain 269 321 IPR001356 GO:0003677
Stsc241661g00030 340 SMART HOX_1 272 330 IPR001356 GO:0003677
Stsc241661g00030 340 Pfam Homeodomain 274 322 IPR001356 GO:0003677
Stsc241661g00030 340 MobiDBLite consensus disorder prediction 54 85 - -
Stsc241661g00030 340 MobiDBLite consensus disorder prediction 320 340 - -
Stsc241661g00030 340 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 24 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241661g00030 Stsc-Chr241661 238124 241489 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc241661g00030 Homeodomain 4.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241661g00030 - - ccaj:109796293 317.775