Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241661g00001 ATGAGGAGGCGTGGAAAGAAGGCATTTGCAAGGTTGTGTGGTGCCCGTGGTGCTGCTGACGACGATGAGGACGACGACGACGACGAAGAAGACAGCTATGCTCACAGACATCGCAGGAATCACATTGCTGAGTTTGATTATGATGGCAGCCAATACAGCCTCGCCGGCCTCCCTCTCCCCTCCCTCGGCGCCACCTCCCACCGCCTCAAGCTCCGTCCTTACAGTGTTTCCCCCTTCAACTACCATTACAGGCACCTTCCAACATTTCTGGTGTTCTTGGTGTTCTATAATGCATGGGTTTGTCCATTTGAATTTGCGTTCCTTAACCAACAATCGGTGCTAAGCGTCATGATAGCTGACAATGTTGTCAATGCATTCTTTGCTATTGACATTGTTCTTACCTTCTTTGTTGCATACCTAGACAAGACTACCTATCTGCTAGTTGATGATAAAAAGCTAATTGCATTGAGGTATGCCAAAACATGGTTGGCTTTAGATGTTGTCTCCACCATCCCCTCTGAAATTGGCCATAGACTCTTGCCTTCTTCCCTGAGAACATATGCTTACTTCAACATGCTTCGCCTTTGGCGTCTTCGCCGAGTCAGTTCCTTGTTTGCAAGATTAGAGAAGGACAGGCATTATAGCTACTTCTGGATTCGCTGCTCGAAACTGATCTGTGTTACACTATTCTCGGCTCATTTTGCTGCCTGCATTTTCTTTTTCATCACTCTGAATCACCGAACCCAAGAAACATGGCTTTCGCTTATTCCGGCAGGCGATGGTCATGGTATCACAAATCTTTATATAGCATCAATTTACTGGTCCATAGTAACACTTACAACGGTTGGTTATGGAGATCTACATCCTATGAACACAAGGGAGATTGTTTTTGATACACTCTATATGCTATTCAATCTTGGGCTAACTGCATATCTTATTGGTAACATGACAAATTTGGTCGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACAGTTCAAGCTGTAACAAGTTTCGCGAAACGGAATAAATTGCCTATTCTCTTGCAAGAACAGATGATTGCACATTTGCATATGAAGTACAGAACTGATATAGAAGGACTACAGCAGCAAGAGATTATTGAATTTCTCCCGAAAGCTATTCGTTCTAGCATCTCTCATTACCTATTCTATCAAGTTATGGAGGAAATCTACTT 1199 0.4362 MRRRGKKAFARLCGARGAADDDEDDDDDEEDSYAHRHRRNHIAEFDYDGSQYSLAGLPLPSLGATSHRLKLRPYSVSPFNYHYRHLPTFLVFLVFYNAWVCPFEFAFLNQQSVLSVMIADNVVNAFFAIDIVLTFFVAYLDKTTYLLVDDKKLIALRYAKTWLALDVVSTIPSEIGHRLLPSSLRTYAYFNMLRLWRLRRVSSLFARLEKDRHYSYFWIRCSKLICVTLFSAHFAACIFFFITLNHRTQETWLSLIPAGDGHGITNLYIASIYWSIVTLTTVGYGDLHPMNTREIVFDTLYMLFNLGLTAYLIGNMTNLVVHGTSRTRKYRDTVQAVTSFAKRNKLPILLQEQMIAHLHMKYRTDIEGLQQQEIIEFLPKAIRSSISHYLFYQVMEEIY 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241661g00001 399 FunFam Potassium channel KAT3 87 322 - -
Stsc241661g00001 399 Gene3D - 84 321 - -
Stsc241661g00001 399 SUPERFAMILY Voltage-gated potassium channels 79 321 - -
Stsc241661g00001 399 PRINTS EAG/ELK/ERG potassium channel family signature 131 140 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241661g00001 399 PRINTS EAG/ELK/ERG potassium channel family signature 312 321 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241661g00001 399 PRINTS EAG/ELK/ERG potassium channel family signature 294 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241661g00001 399 PRINTS EAG/ELK/ERG potassium channel family signature 268 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241661g00001 399 PRINTS EAG/ELK/ERG potassium channel family signature 96 103 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241661g00001 399 PRINTS EAG/ELK/ERG potassium channel family signature 120 130 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc241661g00001 399 PANTHER POTASSIUM CHANNEL AKT1 50 399 IPR045319 GO:0005249|GO:0006813
Stsc241661g00001 399 Pfam Ion transport protein 89 327 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc241661g00001 399 Gene3D Helix hairpin bin 323 389 - -
Stsc241661g00001 399 SUPERFAMILY cAMP-binding domain-like 325 398 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241661g00001 Stsc-Chr241661 15 2755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241661g00001 27 399 Ion Channels AT2G25600 57.937 2.64e-139 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241661g00001 K21867 - gmx:100802964 514.998