Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241660g00065 ATGGACGATGTGTTTCTTAGCTTTAGAGGCAAAGATACTCGCTACGGTTTCACCGGAAATCTTTATGAAGCCCTGTCCCGCAAAGGAATCAACACCTTCTTTGATGATGATGACATTCAAAGTGGAGATGAAATTACTCCCACACTTCTCAGTGCAATTCAGGAGTCTAGGATTGCTATCGTTGTGCTCTCTCCTAACTATGATTCTTCTTCTTTTTGCTTAGATGAACTTGTTCACATCCTTCGTTTCATTAAGGGAAATAATCGCTTGGTTGTGCCAGTTTTCTATGATGTGGATCCTTGTGATGTGCGCCATCAAATAAAGAGTTTTGGAAAAGCTATGGCTAAGCATGAGGAGAGATTCAAAAGCGAATTGAACAAGTTGCAAAAATGGAGGGATGCTCTGTGTGAAGTAGCTGAATTGTCTGGCTATCATTTCAAACAAGGGGATGGATATGAACACATGTTTATTGCAAACATTGTGGATAACATCTCAAAAAGGATTACACGATGCCCAGCTTTGCATGTTGCTGATCACCCAGTTGGACTGCAATCCCAACTGTCAGAGGTAGCTTCTCTTCTAGATGTTGAATCTAATGCTGGTGTTCACATGGTAGGTATATATGGAATTGGGGGAATAGGAAAAACCACTCTTGCTGCTGAAGTTTACAACTTGATTGCCGACCATTTTGAAGGTTTGAAAGCTATTGCTGGAAAACCTGATTGGTTTGGTTGTGGTAGCAGAGTCATTATTACAACACGGGATAAACATTTGTTAACACTTCATGGTGTTGAAAGAACATACGAAGTGCAAGGTTTAAACGAGGAGGACTCCTTAAATTTGCTTACTTTGAATGCTTTTAAATCTGATGATGTTAGTCCAAGTTACATGAATGTTTTATCCCGTGTAGTAACTTATGCTTCTGGGCTTCCGTTGGCTTTGGAAGTAATAGGTTCTAACTTGTTTGGAAAGGATTTAGAGCAGTGGCAATCTGCATTGGATCGATATGAAAATACTCTTGATAAAAACATACAGAAGATACTTCAAGTAAGTTTTGATGCTTTGGGGAAATTTGAGCAGAGCGTTTTTCTGGATATAGCTTGTTGTTTTAAAGGATATTCATTAGATGAAATTACAGATTTACTTCAAGCTCATTATGGGAGTTGCATGGAATATCATCTTCAAGTGTTAGTTGAAAAATGTCTCATAAAGACCAGCAGGTTTGGTACAGGAATGATAATACATTATTTGATAGAGGACATGGGCAAAGAAATTTTTCTTGAAAGATCGCCAGAAATCCTTGGAAAGCGTAGTAGGTTATGGTCTTATGAAGATATAGTAAATATTTTAGAAAACAATCAAGGGACTAGTGCAGTTGAAATTTTATATCTAGAATTTCCTTTCTTTAGAAGGGAAAGAGATGAAGATCCAATGACAAAAGAGAAATGTGAAGATGTACAAGTGACATGGGATGGAACAGCTTTTAAAGAGATGAAAAATCTCAAAACACTCATCATAAAAAATGGTTATTTTTCGAGAAGTCCTAAACATCTTCCAAACAGTTTAAGAGTGTTGGAATGGTGGAGATATCCTGCAAGATGTTTTCCAAATGATTTTCATCCAAAGAAGCTCAGCATACTCAAGTTACCTGATTATCCCCATGCGATACCCGAGTTGGATAGCTTATCGAAGGGGTTGGACACCTTAACAGTTTTGAATTTTGATTACATTAGAGTTGACAGTTCAATTGGTTTTCTACCTAAGCTCAAAACATTGAATGCTGATTATTGTGAGAAGCTTAGTTGTTTTCCACCTGCTATCAATTTGCCCTCGCTGGAAATACTCGGCCTATCTGGTTGCCAAAGTCTAGAGAATTTTCCAGAAATACTACAAGAGATGAAAAATGTAACTACGCTTTTTATGGAGGGCAATGGCATAAAAGATTTGCCATGTTCATTTTGTAACCTTTCTGGGTTATCGCGTTTGAAAATGGAAACGAATGAAATGTGTAGGATGCCAAGTGTGATTGCCATGATGCCACAACTGAATTCGTGTGTGATTATAGGTACCAATGAGGGGAGGGTATCAGGAAAGCAGGAGAAAGAGGGGCTTCAAGGAATACTCACTCACTCCCTCTGCTCTCCAGCACTAACATCTCTTTTTCTCTACTACTGCGAGCTTTCAGATGGTTTATTTCCACTGGCTGTTGCATGCTTTCCCAATCTGTTCAAGTTAGACCTAAGAGGCAGTAATTTCACAATCCTTCCTGAATGCATTCAACAATTTCGCTTTCTAGAGATCCTCGATGTGGATGATTGCGATCATCTTCGGGAGATTAGAGGGATTCCACCAAGCTTGAAAAGCTTCTCAGCATTGAATTGCAAATCATTGAGTCACAGGGGCACAAGCGTGTTACTCAATCAGGAAGAATTCCAAGTTGGTTTGAACACTACAGCAAGGGGGCTTCTATTTCTTTCTGGTTTCGTGGAAACCATTTCCCTCGCAATGCTCTCTTTCGTTGCCATTCTACTAAGGGATGACCTCCATTGCAACCCAATTCGTGTATCACTCTTTTTGACCATCAACAGCAAACAAGTTTCCTGTGGCTGGAGATCCCTGGTGGATCAATTACTTGTTTCAGACTTGTCAGACAGGGTAGGTTATTATGATAGAGCACTAGTTTTTGAGAATGAATGGAACCATGCAAAGGTTTCATATCAAGCACAACAACTTTCCGATGGGACATATGATGAGTACCATGATGTCCCAATTGATTCAATTGCAAAAGAGATTGGAGTGCACATATGGAAGGTAAAGAGGAGTAGCATCATGGAAGATATTCAATTCACTGATCCATACAAAATGAGAGAACTAATTATAATGATGATGATGGTGTCAATGGTATTGCCTAACCACGAGAACCAACCCTTGCTCCTCCAAACACGCATTGGTTTGTGGACATTGCTCTTTCTAACACACACTGCTATTTTGGGCATCTCTGCGCCAATCAAAAGAAGTCAACGACATGCTCTTGGTTGGAAGCTGCGGAGGACGACCAAGTAG 3063 0.3957 MDDVFLSFRGKDTRYGFTGNLYEALSRKGINTFFDDDDIQSGDEITPTLLSAIQESRIAIVVLSPNYDSSSFCLDELVHILRFIKGNNRLVVPVFYDVDPCDVRHQIKSFGKAMAKHEERFKSELNKLQKWRDALCEVAELSGYHFKQGDGYEHMFIANIVDNISKRITRCPALHVADHPVGLQSQLSEVASLLDVESNAGVHMVGIYGIGGIGKTTLAAEVYNLIADHFEGLKAIAGKPDWFGCGSRVIITTRDKHLLTLHGVERTYEVQGLNEEDSLNLLTLNAFKSDDVSPSYMNVLSRVVTYASGLPLALEVIGSNLFGKDLEQWQSALDRYENTLDKNIQKILQVSFDALGKFEQSVFLDIACCFKGYSLDEITDLLQAHYGSCMEYHLQVLVEKCLIKTSRFGTGMIIHYLIEDMGKEIFLERSPEILGKRSRLWSYEDIVNILENNQGTSAVEILYLEFPFFRRERDEDPMTKEKCEDVQVTWDGTAFKEMKNLKTLIIKNGYFSRSPKHLPNSLRVLEWWRYPARCFPNDFHPKKLSILKLPDYPHAIPELDSLSKGLDTLTVLNFDYIRVDSSIGFLPKLKTLNADYCEKLSCFPPAINLPSLEILGLSGCQSLENFPEILQEMKNVTTLFMEGNGIKDLPCSFCNLSGLSRLKMETNEMCRMPSVIAMMPQLNSCVIIGTNEGRVSGKQEKEGLQGILTHSLCSPALTSLFLYYCELSDGLFPLAVACFPNLFKLDLRGSNFTILPECIQQFRFLEILDVDDCDHLREIRGIPPSLKSFSALNCKSLSHRGTSVLLNQEEFQVGLNTTARGLLFLSGFVETISLAMLSFVAILLRDDLHCNPIRVSLFLTINSKQVSCGWRSLVDQLLVSDLSDRVGYYDRALVFENEWNHAKVSYQAQQLSDGTYDEYHDVPIDSIAKEIGVHIWKVKRSSIMEDIQFTDPYKMRELIIMMMMVSMVLPNHENQPLLLQTRIGLWTLLFLTHTAILGISAPIKRSQRHALGWKLRRTTK 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241660g00065 1020 Gene3D - 170 237 IPR027417 -
Stsc241660g00065 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 366 IPR027417 -
Stsc241660g00065 1020 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 144 IPR035897 -
Stsc241660g00065 1020 Coils Coil 326 346 - -
Stsc241660g00065 1020 Gene3D - 272 356 IPR042197 -
Stsc241660g00065 1020 FunFam Disease resistance protein (TIR-NBS-LRR class) 1 170 - -
Stsc241660g00065 1020 SUPERFAMILY "Winged helix" DNA-binding domain 343 450 IPR036390 -
Stsc241660g00065 1020 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 234 794 IPR044974 GO:0006952
Stsc241660g00065 1020 Pfam NB-ARC domain 246 353 IPR002182 GO:0043531
Stsc241660g00065 1020 Pfam NB-ARC domain 186 232 IPR002182 GO:0043531
Stsc241660g00065 1020 Gene3D - 2 169 IPR035897 -
Stsc241660g00065 1020 SMART till_3 1 141 IPR000157 GO:0007165
Stsc241660g00065 1020 Gene3D Ribonuclease Inhibitor 622 806 IPR032675 -
Stsc241660g00065 1020 ProSiteProfiles TIR domain profile. 1 168 IPR000157 GO:0007165
Stsc241660g00065 1020 Pfam TIR domain 3 167 IPR000157 GO:0007165
Stsc241660g00065 1020 Coils Coil 114 134 - -
Stsc241660g00065 1020 SUPERFAMILY L domain-like 489 805 - -
Stsc241660g00065 1020 PRINTS Disease resistance protein signature 607 623 - -
Stsc241660g00065 1020 PRINTS Disease resistance protein signature 204 219 - -
Stsc241660g00065 1020 Gene3D Ribonuclease Inhibitor 473 621 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241660g00065 Stsc-Chr241660 321694 325522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241660g00065 233 789 WRKY Transcription Factor Family AT5G45050 29.021 1.44e-45 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241660g00065 - - aip:107644584 866.685