Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241660g00064 ATGGATCTGCAATCTCCCTTCTCTGCAACTCGTTCATTCAACTATGAATATGAATGGAAATATGATGTGTTTCTTAGCTTTAGAGACGAAGACACTCGCTATGGTTTCACTGGCAATCTTTATAAAGCCCTTTCCGACAAAGGAATCAACACCTTCTTTGATGATGAAGACATTGAAACTGGAGATGAAATTACTCCCACACTTGTCAGATCAATTCAAGAGTCTAGGATTGCTATCGTTGTGCTCTCTGCCAACTATGTTTCTTCTTCTTTTTGCTTAGATGAGCTTATTGAGATCCTAAGTTGCATTAAGGGAAATAATCGCTTGGTTATGCCAGTTTTCTTTGAAGTGGATCCTTGTGATGTACGCCATCAAAGAAACAAGTTCAAAGAAGCAGTGGATAAGCATGAGAAGAGATACAAGGATGACATGAACAAGGTGAAAAACTGGAAGAAGGCTCTGCATCAAGTGGCTAATTTGTCTGGCTATCATTTCAAACCCGGGGATGGATATGAGCACATGTTTATTGGAAACATCGTGGATAACATCTCTAAAAGGATTACACGACGCCCAGCTTTGCATGTTGCTGATCATCCAGTTGGGTTGCAATCCCAAGTGTCGAAGGTAGCTTTGCTTCTAGATGTTGAATATAATGCTGGAGTTCACATGGTAGGGATATATGGAATTGGGGGTATAGGAAAAACAACACTTGCTGCTGCCGTTTACAACTTCATTGCTCACAATTTTGAAGGTTTGTGCCTTCTTGAAAATGTGAGAGAAAATTCAAATAAACGCGGTTTAGTACATCTCCAGAATATCCTTCTTTCTGAGATATTAGGGGATAAAAATATTAACCTAACAAGTAGTAAACAAGGAACTTTAGAGATATGTAAGAGGCTATGTCGAAAGAAAGTTCTTTTGGTTCTCGATGATGTTGATGATCCGGAGCAGTTGAAAGCTATTGCTGGAAAACCTGATTGGTTTGGTCCTGGAAGTAGAGTTATTATTACAACACGGGATAAACATTTGCTAACACTTCATGGTATTGAAATTACATACGAAGTACAAGGTTTAAATGAGGAGGACTCCTTAAACTTGCTTACTTGGAATGCTTTTAAATCTGATGTTGTTAGTCCAAGTTACATGAATGTTTTATCCCGTGTAGTAACTTATGCTTCTGGGCTTCCGTTGGCTTTGGAAGTAATAGGTTCTAACTTGTTTGGAAAGGATTTACAAGAATGGGAATCAGCATCGGATCAATATGAAAGAAATCTTGATAATAAGATACGTAAGATCCTTCAAATAAGTTTTGATGCTTTGGGAAAAGACGAACAAAGTGTTTTTCTCGATATTGCTTGTTGTTTTAAAGGATATAAATTAGTTGAAGTTATAGAGCTATTTCATGCTCGTTATGGGAGTTGCATGAAATATCATATTGGAGTGTTAGTTGAAAAATCTCTCGTAAAAATTCAATTTGATGGAGAAGTGGCAATGCATGATTTGATAGAGGATATGGGCAAAGAAATAGTTCTAGATGAATCAACAGAAACTCCTGGAAAGCATAGCAGGCTATGGTCATATGAGGATATAGTAAAAGTTTTAGAAAATAATCAAGGGTTGATTACCTTAACAGTTTTGAAATTTGATAACAGTCAGTTTCTAAAAGAGATGCCCGATGTGTCTAGTCTTCAAACTTTACAAGAATTATCTTTGGACGAATGTAAAAATTTAGTTAGAGTTGACAGTTCAGTTGGTTTTTTACCTAAGCTTAAAATATTGAATGCTTCTTACTGTGTGAAGCTTAGTCGTTTTCCAGCTGCTATCTATTTGCCTTCGCTGGAAACACTTAACCTATGTGGTTGCCGAAGCCTTGAGAATTTTCCAGAAATACTACAAGAGATGAAAAATGTAACTATATTTTGGTTGGTGGGCTCTGGTATAAAGGATTTGCCACATTCATTTCGTAACCTTTCTCGATTGTCGCAATTGTTAATGGGAAATAATAAGATGTGCAGGATCCCAGATGTCATTGGCATGATGCCACAACTGACTCTTTGTGCGATTGTGGAAGTTGGCAAAAATAGTAAGGTATCAGGAAAGCAGGAGAAGGAGGGGCTTCAACTTCAACTTCAACTTGAAGGAATACTCACTCACTCCCTCTCCTAA 2166 0.3744 MDLQSPFSATRSFNYEYEWKYDVFLSFRDEDTRYGFTGNLYKALSDKGINTFFDDEDIETGDEITPTLVRSIQESRIAIVVLSANYVSSSFCLDELIEILSCIKGNNRLVMPVFFEVDPCDVRHQRNKFKEAVDKHEKRYKDDMNKVKNWKKALHQVANLSGYHFKPGDGYEHMFIGNIVDNISKRITRRPALHVADHPVGLQSQVSKVALLLDVEYNAGVHMVGIYGIGGIGKTTLAAAVYNFIAHNFEGLCLLENVRENSNKRGLVHLQNILLSEILGDKNINLTSSKQGTLEICKRLCRKKVLLVLDDVDDPEQLKAIAGKPDWFGPGSRVIITTRDKHLLTLHGIEITYEVQGLNEEDSLNLLTWNAFKSDVVSPSYMNVLSRVVTYASGLPLALEVIGSNLFGKDLQEWESASDQYERNLDNKIRKILQISFDALGKDEQSVFLDIACCFKGYKLVEVIELFHARYGSCMKYHIGVLVEKSLVKIQFDGEVAMHDLIEDMGKEIVLDESTETPGKHSRLWSYEDIVKVLENNQGLITLTVLKFDNSQFLKEMPDVSSLQTLQELSLDECKNLVRVDSSVGFLPKLKILNASYCVKLSRFPAAIYLPSLETLNLCGCRSLENFPEILQEMKNVTIFWLVGSGIKDLPHSFRNLSRLSQLLMGNNKMCRIPDVIGMMPQLTLCAIVEVGKNSKVSGKQEKEGLQLQLQLEGILTHSLS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241660g00064 721 Coils Coil 133 153 - -
Stsc241660g00064 721 PRINTS Disease resistance protein signature 223 238 - -
Stsc241660g00064 721 PRINTS Disease resistance protein signature 299 313 - -
Stsc241660g00064 721 PRINTS Disease resistance protein signature 608 624 - -
Stsc241660g00064 721 PRINTS Disease resistance protein signature 392 406 - -
Stsc241660g00064 721 Gene3D Ribonuclease Inhibitor 521 692 IPR032675 -
Stsc241660g00064 721 Coils Coil 411 431 - -
Stsc241660g00064 721 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 163 IPR035897 -
Stsc241660g00064 721 Gene3D - 357 441 IPR042197 -
Stsc241660g00064 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 451 IPR027417 -
Stsc241660g00064 721 SUPERFAMILY "Winged helix" DNA-binding domain 427 535 IPR036390 -
Stsc241660g00064 721 SMART till_3 20 160 IPR000157 GO:0007165
Stsc241660g00064 721 SUPERFAMILY L domain-like 498 684 - -
Stsc241660g00064 721 Gene3D - 188 350 IPR027417 -
Stsc241660g00064 721 Pfam NB-ARC domain 204 438 IPR002182 GO:0043531
Stsc241660g00064 721 Gene3D - 15 187 IPR035897 -
Stsc241660g00064 721 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 683 IPR044974 GO:0006952
Stsc241660g00064 721 Pfam TIR domain 20 185 IPR000157 GO:0007165
Stsc241660g00064 721 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Stsc241660g00064 721 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241660g00064 Stsc-Chr241660 314904 318887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241660g00064 523 669 WRKY Transcription Factor Family AT4G12020 34.014 1.30e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241660g00064 - - ahf:112751488 800.816