Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241660g00062 ATGGATCTCCAATCTCCCTTCCCCGCAACTCCTTCCTTCAACTATGAATATGAATGGAAATACGATGTGTTTCTTAGCTTTAGAGGCAAAGACACTCGCTATGGTTTCACTGGCAATCTTTATAAAGCCCTTTCCGCCAAAGGAATCAACACCTTCTTTGATGATGATGACATTCAAAGTGGAGACGAAATTACTCCCACACTTGTCACAGCAATTCAAGAGTCTAGGATTGCTATCATTGTCCTCTCTCCTCACTATGCTGCTTCTTCTTTTTGCTTAAATGAGCTTGCTGAGATCCTTCGTTGCATTAAGGGAAATAATCGCTGGGTTGTGCCAGTTTTCTTTGAAGTGGATCCTTGTGATGTACGCCATCTAAGAAATAGTTTTGGAGAAGCCATGGCTAAGCATGAGAAGAGATACAAGGATGACATGAACAAGGTACAGAAATGGAAGGAGGCTCTGTATCAAGTGGCTAATTTGTCTGGCTATCATTTCAAACAAGGGAAAGGATATGAATACATGTTTATTGGAAACATTGTGGAAGACATCTCAAAAAGGATTACACGGCGGCCAGCTTTGCATGTTGCTGATCAACCAGTTGGACTGCAATCCCGAGTGTCAAAGGTAGCTTGGCTTCTAGATGTTGAATCTAATGCTGGAGTTCACATGGTAGGGATATATGGAATTGGCGGAATTGGAAAAACCACTCTTGCTGCTGCTGTTTACAACTTGATTGCTGACCATTTTGAAGGTGCGTGTTTTCTTGAAAATGTAAGAGAAAATTCAAATGGACACGGTTTAGTACATCTCCAAAATATCCTTCTTTCTGAGGTATTAGGAGAGAACGATATTAAACTAACCAGTAGTAAACAAGGAGCTTCAAAGATACATAACAGGCTATGTCGAAAGAAAGTTCTTTTGGTTCTCGATGATGTTGATGATCCTGAGCAGTTGAAAGCTATTGCTGGAAAACCTGAGTGGTTTGGTTGTGGTAGCAGAGTCATTATTACAACACGGGATAAACATTTGCTAACACGACATGGTGTTGAAAGGACATACGAAGTACAAGGTTTAAATGAGAAGGACTCCTTAAATTTGCTTACTTGGAATGCTTTCAAATCTGATATTGTTAGTTCAAGTTACATGAATGTTTTATCCCGCGTAGTAACTTATGCTTCTGGGATTCCATTGGCTTTGGAAGTAATAGGTTCTAACTTGTTTGGAAAGGATTTAGTAGAATGGGAATCTGCATTGGATCAATATGAAAGAAATCTTGATAATAGGATACGTAAAATCCTTCAAAGAAGTTTTGATGCTTTGGGAAAAGATGAACAAAGTGTTTTTCTCGACATTGCTTGTTGTTTTAAAGGATATAAATTAGGTGAAGTTATAGATATGCTTCAAGCTCATTATGGGAGTTGCATGAAATATCATATTGGAGTGTTGGTTCAAAAATCTCTCATAAAGATATACGGGAATGACTGTAAAGTGGAAATACATGATTTGATAGAAGACACAGGCAAAGAAATTTTTCTAGAGAAATCACCGGAAATGCCTGGAAAGCGCAGTAGGTTATGGTCTTGTGAAGATATAGTAAAAGTTTTAGAAAACAATCAAGGTACTAGTGCCATTGAAATTATATATCTAAAATTTCCTTTCTTTGGAAGGGAAAGAGATGAAGATCCCATAACAAAAGAGAAATGTAAAGATGTACAAGTGAAATGGGATGGAATAGCTTTTAAAGAGATGAAAAATCTCAAAACGCTCATCATAAAAAATGGTTATTTTTCCTTAAGTCCTAAGAATCTACCGGACAGTTTAAGAGTGTTGGAATGGTGGAGATATCCTGCAAACTGTTTTCCAGATGATTTTCATCCAAAGAAGCTCAGCATACTCAAGTTACCTCATTATCTCCATCCGATTCCCGAGTTGGATAGCTTATCCAAGGAGTTGGTCACCTTAAAAGTTTTGAAGTTTGATTGTAGTGAATTTTTAAAGGAAATACCCAATATGTCCAGTCTTCCAATTTTACAAAAATTATCTTTCTCTGGATGTAAAAATTTAGTTAGAGTTGACAATTCAGTTGGCTTTCTACCCAAGCTTAAAATACTGAATGCTTCTTATTGTGAGAAGCTTAGTTGGTTTCCAGCTGCTATCAATTTGCCCTCGCTGGAAACACTCCACCTATCTGGTTGCCGAAGCCTCGAGAATTTTCCAAATATATCACAAGAGACGAAAAATGTCACTGCACTTGAGTTATACCACACAAGCATAAAAGATTTGCCATATTCATTTCGTAACCTTTCTAGGTTGTCGCGTTTGGATATAAGAGAGAATAAAATGTGTAGGATGCCAAATGTCATTGCCATGATGCCACAACTGTCTACTCTTGTTATGAAGGGAGGTGACAATAAGGAGGGGAAGGTATCAGGAAAGCGGGAGATGGAGGGGCTTCAACTTGAAGGAATACTCACTCATCACTCCCTCTGCTCTTCAAAACTACGAACTCTTGATCTCAAGAACTGCGAGCTTTCAGATGGTTTTTTTCCACTGGCTGTTGCATGGTTTCCCAATCTGACAATGTTAGACCTAAGAGGCAGTTATTTCACAATCCTTCCTGAATGCATTCAACAATTTCGCTTTCTATGGTACCTCAATGTGGATGAATGCGAGCATCTCCGGGAGATTAGAGGGGTTCCACCATGCTTGAGATACTTCTCAGCATTAAATTGCAAATCATTGAGTCACAGGGGCACAGGCGTGTTACTCAATCAGGAACTGCATGAGAATGGACCGATCCAGCTTGTTATGCCAGGAAGGATTCCAAGGTGGTTTGAGCAGCGCAGCAGGGGACCTTCTATTTCTTTCTGGTTTCGTGGAAAATATTTCTCTAGCAATGCTCTTCTCGTTGCCATTCTACTCACGGATAACTTCCATTGCAACCCAATTTATGTACTACCCTTTGTGACCATCAACGGCAAAGAATTTCCCTTGAGACACAGAACCCGAATGGAGCAATTATTTGTTTTTGATCTGTCAAGTATAACCAACTCTTCTAAAAATGGATGGAATCATGCAAAGTTTTCTTATACAGCAATAGAACATTCTGATGGGAAATATGATTACCATGATGTCCAAATTGAGTCAATTGCAAAAGAGATTGGAATGCACGCACGAAAGCAAAAGAAGAGTAGTATCATGCAAGATGTTCGATTCACTGATCCTTACAAAATGAGAGAATTAGTTATAATGATGATGATGGTGTCAATGGTATTTCCCAACCACAAGAACCAACCATTGCTCCTCCAAACACGCATTGGTTTGTGGACATTGCTCTTTCTAACACACACAGCTTTGGACAAGAACACTCTTAGTTAG 3378 0.3893 MDLQSPFPATPSFNYEYEWKYDVFLSFRGKDTRYGFTGNLYKALSAKGINTFFDDDDIQSGDEITPTLVTAIQESRIAIIVLSPHYAASSFCLNELAEILRCIKGNNRWVVPVFFEVDPCDVRHLRNSFGEAMAKHEKRYKDDMNKVQKWKEALYQVANLSGYHFKQGKGYEYMFIGNIVEDISKRITRRPALHVADQPVGLQSRVSKVAWLLDVESNAGVHMVGIYGIGGIGKTTLAAAVYNLIADHFEGACFLENVRENSNGHGLVHLQNILLSEVLGENDIKLTSSKQGASKIHNRLCRKKVLLVLDDVDDPEQLKAIAGKPEWFGCGSRVIITTRDKHLLTRHGVERTYEVQGLNEKDSLNLLTWNAFKSDIVSSSYMNVLSRVVTYASGIPLALEVIGSNLFGKDLVEWESALDQYERNLDNRIRKILQRSFDALGKDEQSVFLDIACCFKGYKLGEVIDMLQAHYGSCMKYHIGVLVQKSLIKIYGNDCKVEIHDLIEDTGKEIFLEKSPEMPGKRSRLWSCEDIVKVLENNQGTSAIEIIYLKFPFFGRERDEDPITKEKCKDVQVKWDGIAFKEMKNLKTLIIKNGYFSLSPKNLPDSLRVLEWWRYPANCFPDDFHPKKLSILKLPHYLHPIPELDSLSKELVTLKVLKFDCSEFLKEIPNMSSLPILQKLSFSGCKNLVRVDNSVGFLPKLKILNASYCEKLSWFPAAINLPSLETLHLSGCRSLENFPNISQETKNVTALELYHTSIKDLPYSFRNLSRLSRLDIRENKMCRMPNVIAMMPQLSTLVMKGGDNKEGKVSGKREMEGLQLEGILTHHSLCSSKLRTLDLKNCELSDGFFPLAVAWFPNLTMLDLRGSYFTILPECIQQFRFLWYLNVDECEHLREIRGVPPCLRYFSALNCKSLSHRGTGVLLNQELHENGPIQLVMPGRIPRWFEQRSRGPSISFWFRGKYFSSNALLVAILLTDNFHCNPIYVLPFVTINGKEFPLRHRTRMEQLFVFDLSSITNSSKNGWNHAKFSYTAIEHSDGKYDYHDVQIESIAKEIGMHARKQKKSSIMQDVRFTDPYKMRELVIMMMMVSMVFPNHKNQPLLLQTRIGLWTLLFLTHTALDKNTLS 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241660g00062 1125 Coils Coil 133 153 - -
Stsc241660g00062 1125 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Stsc241660g00062 1125 SMART till_3 20 160 IPR000157 GO:0007165
Stsc241660g00062 1125 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 163 IPR035897 -
Stsc241660g00062 1125 Coils Coil 411 431 - -
Stsc241660g00062 1125 SUPERFAMILY L domain-like 578 916 - -
Stsc241660g00062 1125 Pfam TIR domain 20 186 IPR000157 GO:0007165
Stsc241660g00062 1125 Gene3D - 189 350 IPR027417 -
Stsc241660g00062 1125 Pfam NB-ARC domain 205 439 IPR002182 GO:0043531
Stsc241660g00062 1125 Gene3D - 15 188 IPR035897 -
Stsc241660g00062 1125 PRINTS Disease resistance protein signature 719 735 - -
Stsc241660g00062 1125 PRINTS Disease resistance protein signature 392 406 - -
Stsc241660g00062 1125 PRINTS Disease resistance protein signature 299 313 - -
Stsc241660g00062 1125 PRINTS Disease resistance protein signature 223 238 - -
Stsc241660g00062 1125 Gene3D Ribonuclease Inhibitor 577 743 IPR032675 -
Stsc241660g00062 1125 Gene3D Ribonuclease Inhibitor 744 922 IPR032675 -
Stsc241660g00062 1125 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 740 IPR044974 GO:0006952
Stsc241660g00062 1125 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
Stsc241660g00062 1125 SUPERFAMILY "Winged helix" DNA-binding domain 428 536 IPR036390 -
Stsc241660g00062 1125 Gene3D - 357 441 IPR042197 -
Stsc241660g00062 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241660g00062 Stsc-Chr241660 297301 301275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241660g00062 4 820 WRKY Transcription Factor Family AT4G12020 28.913 6.92e-75 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241660g00062 - - ahf:112751488 1370.14