Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241660g00060 ATGGATCTTCAATCTCCCTTCTCCTCAATCCATTCCTTCAACTATCAACATAAATGGAAATACGATGTGTTTCTTAGCTTTAGAGGCAAAGACACTCGCTACGGTTTCACCGGCAATCTTTATGAAGCCCTTTCCCGCAAAGGAATCAACACCTTCTTTGATGATGACGACATTGAAAGTGGAGACGAAATTACTCCCACACTTCTCAATTCAATTCAGGAGTCCAGGATTGCTATCGTTGTTCTCTCTCCTAATTATGCTTCTTCTTCTTTTTGCTTAGCTGAGCTTGTTCACATCCTTCGTTGCATTAAGGGAAATAATCGCTTGGTTGTGCCAGTTTTCTTTGAGGTGGATCCTTCTGATGTGCGCCATCAAAAAAACACTTTCAAAGAAGCAATGGATAACCATGAGAAGAGATACAAGGATGACATGAACAAGGTGCAAAAATGGAGGGAGGCTCTGACTCAAGTGACTAATTTGTCTGGCTATCATTTCGATCACAGGGATGGATATGAACACATGTTTATTGCAAACATTGTGGAAGACATCTCTAAAAGGATTACACGACGCCAAGCTTTGCATGTTGCTGATCATCCAGTTGGGCTGCAATCCCGAGTGTCAGAGGTAGCTTTACTTCTAGATGTTGAATCTAATGCTGGAGTTCACATGGTAGGGATATATGGAATTGGGGGACTAGGAAAAACCACTCTTGCCGCTGCACTTTACAATTCGATTGCTGACCATTTTGAAGGTGTGTGCTTTCTGGAAAATGTCAGAGAAAATTCAACTAAATGTGGGTTGGCACGTCTTCAAAATATCCTTCTCTGTAAGATATTAGGGAAGGAGGGGGTCCAGATAGTAGGCGTTAAAGAAGGAATCTCACTGATAAAACAAAGGCTTTGTCGAAAGAAAGTTCTTTTGGTTTTAGATGACATTAATGAGCAGGAGCAGTTGAATGCCATTGCTGGAAAACCTGATTGGTTTGGTCCTGGTAGCAGAGTCATTATTACAACACGAGACAAACATTTGCTAACACTTCATGGCGTTGAAAGAACATATGAGGTACAAGTCTTAAATAAGGAACTGTCCTTAGATTTGCTTTCTTGGAAAGCTTTCAAATCTGATATTGTCAACCCAAGGTATGCGAATGTTTTATTCCGTGCAGTAACTTATGCTTCTGGGCTTCCGTTGGCTTTGGAAGTAATAGGTTCTAACTTGTTCGGAAAGGGTTTGGAAGAATGGGAATCTGCATTGGATCAATATGAAAGAAATCTTGATAATAAGATACGTAAGATACTTCAAGTTAGTTTTGATGCTTTGGGAAAAGATGTGCAGAGTGTTTTTCTCGATATTGCTTGCTGTTTTAAAGGATATACACTGATGAAAGTAGCAAATATACTTGAAGCTCATTACGGGAGTTGCATGAGATATCATATTGGAGTGTTGGTTGAAAAATCACTCATAAAGATCCATCAGATTGGTGGAGTGATAATACATGATTTGATAGAGGAAATGGGCAAAGAAATTGTTCTAGAAGAATCACCCAAAATGCCTGGAAAGCGTAGTAGATTATGGTCTTGTGAAGATATAGTTGAAGTTTTAGAAAACAATCAAAAGGGGACAAGTGCCACTGAAATGATATATCTAGAATTTCCTTTATTTAGAAAGGAAGGAGATGGAGATCCAATGACCAAAGAGAAATGTAAAGATGTACAAGTGAAATGGGATGGAACAGCTTTTAAAGAGATGACAAATCTCAAGACTCTCATCATAAAAAATGGATATTTTTCCAGAAGTCCTAAATATTTTCCGAACACTTTAAGAGTATTGAAATGGTGGAGATATCCTTCAAAATGTTTTCCACCTGATTTTCATCCAAAGAAACTTACCATACTGAAGTTACCTGATTATCTCCATAGGTTACCCAAGTTGGATAGCTTGTCCAAGGCAAGTGGGTTGACCACCTTAACTGTTTTGAATTTTGATAACAGTCAGTTTCTAAAAGAAATACCCAATATGTCTAGTCTTGGAACATTACAAAAATTATCTTTCAAGAAATGTAAAAATTTAGTTAGAGTTGACAGTTCAGTTGGCTTTCTACCTAAGCTTAAAATGTTGGATGCTGAATATTGTGAGAAGCTTAGTTGTTTTCCTCCTGCTATCAATTTGCCCTCACTGACAAAACTCGGCCTATCTTATTGTCCAAGGCTCGAGAATTTTCCAGAAATACTACAAGAGATGAAAAATGTAACTAGCCTTCTTTTGGAGGGCACTGGCATAAAAGATTTGCCATGTTCATTTCGTAACCTTTCTGGGTTGTGGGCATTGTTTCTGGAAAGGAATAGAATGTGTAGGATGCCAAGTGTGATTGCCATGATGCCACAACTGGCTTGTTGTGCGATTGAGGGAGGTGGCAATAACGGGAAGGAGGGGCTTCAAGTTGAAGGAATACTCACTCACTCCCTCTGCTCTTCAAAACTAGAATCTCTTTATCTCAACAACTGCGAGCTTTCAGATGGTTTTTTTCCACTGACTGTTGCATGGTTTCCCAATCTGACCATGTTAGATTTAAGTGGCAATAATTTCACAATCCTTCCTGAATGCATTCAAGAATTTCGCTTTCTATGGCAGCTCAATGTGGATAATTGCAAGCATCTTCGGGAGATTAGAGGGAGTCCACCATTCTTGAAAAATTTCTCTGCATTAGGTTGCAAATCATTGAGTCCCAAGGGCACAAGCGTGTTACTAAATCAGGAACCGCACGAGGATAGGTGGATTCATTTTGCTATGCCAGGGAGGATTCCAAGGTGGTTTGAGCAGCACAGCAGGGTACCTTCTATTTCTTTCTGGTTTCGTGGCAATGACTTCCCTGGCAATGCTATTCTCCTGGCCATTCTACTCACCAATGACTTCCATTGCAACCCAATTAAAGTAACACCCATTGTGACCATCAACGGCACAATAATTTCCGATACATGCGGAGGTAACGGAACCCTAATCGAGCAATTATTTGTTTTTAATCTGTCAGGTATAACCTCCTCTCTAGGTTTTGAAAATGGATGGAATCATGTAATGGTTTCATATGAAGCACAGACTTTTTCTGAGACATCTGAGTACCATGATGTCCAAATTGAGTCAGTTGCAAAAGAGATCGGAGTACACTTATTGAAGCAAAAGAGCAGCAATATGATGCAAGATATTCGATTTACTGATCCTTACAAAATGAGAAAACTAATTATGGTGATGATGATGGTGTCAATGGTAATGCCCAACCACAAGAACCAACCCTTGCTCCTGGAGACAAGCATTGGTTTGTGGACATTGCTCTTTCTAAGTCTAACACACACATAG 3351 0.3951 MDLQSPFSSIHSFNYQHKWKYDVFLSFRGKDTRYGFTGNLYEALSRKGINTFFDDDDIESGDEITPTLLNSIQESRIAIVVLSPNYASSSFCLAELVHILRCIKGNNRLVVPVFFEVDPSDVRHQKNTFKEAMDNHEKRYKDDMNKVQKWREALTQVTNLSGYHFDHRDGYEHMFIANIVEDISKRITRRQALHVADHPVGLQSRVSEVALLLDVESNAGVHMVGIYGIGGLGKTTLAAALYNSIADHFEGVCFLENVRENSTKCGLARLQNILLCKILGKEGVQIVGVKEGISLIKQRLCRKKVLLVLDDINEQEQLNAIAGKPDWFGPGSRVIITTRDKHLLTLHGVERTYEVQVLNKELSLDLLSWKAFKSDIVNPRYANVLFRAVTYASGLPLALEVIGSNLFGKGLEEWESALDQYERNLDNKIRKILQVSFDALGKDVQSVFLDIACCFKGYTLMKVANILEAHYGSCMRYHIGVLVEKSLIKIHQIGGVIIHDLIEEMGKEIVLEESPKMPGKRSRLWSCEDIVEVLENNQKGTSATEMIYLEFPLFRKEGDGDPMTKEKCKDVQVKWDGTAFKEMTNLKTLIIKNGYFSRSPKYFPNTLRVLKWWRYPSKCFPPDFHPKKLTILKLPDYLHRLPKLDSLSKASGLTTLTVLNFDNSQFLKEIPNMSSLGTLQKLSFKKCKNLVRVDSSVGFLPKLKMLDAEYCEKLSCFPPAINLPSLTKLGLSYCPRLENFPEILQEMKNVTSLLLEGTGIKDLPCSFRNLSGLWALFLERNRMCRMPSVIAMMPQLACCAIEGGGNNGKEGLQVEGILTHSLCSSKLESLYLNNCELSDGFFPLTVAWFPNLTMLDLSGNNFTILPECIQEFRFLWQLNVDNCKHLREIRGSPPFLKNFSALGCKSLSPKGTSVLLNQEPHEDRWIHFAMPGRIPRWFEQHSRVPSISFWFRGNDFPGNAILLAILLTNDFHCNPIKVTPIVTINGTIISDTCGGNGTLIEQLFVFNLSGITSSLGFENGWNHVMVSYEAQTFSETSEYHDVQIESVAKEIGVHLLKQKSSNMMQDIRFTDPYKMRKLIMVMMMVSMVMPNHKNQPLLLETSIGLWTLLFLSLTHT 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241660g00060 1116 PRINTS Disease resistance protein signature 299 313 - -
Stsc241660g00060 1116 PRINTS Disease resistance protein signature 721 737 - -
Stsc241660g00060 1116 PRINTS Disease resistance protein signature 392 406 - -
Stsc241660g00060 1116 PRINTS Disease resistance protein signature 223 238 - -
Stsc241660g00060 1116 Coils Coil 133 153 - -
Stsc241660g00060 1116 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
Stsc241660g00060 1116 SUPERFAMILY L domain-like 576 908 - -
Stsc241660g00060 1116 Coils Coil 411 431 - -
Stsc241660g00060 1116 SMART till_3 20 160 IPR000157 GO:0007165
Stsc241660g00060 1116 SUPERFAMILY "Winged helix" DNA-binding domain 427 535 IPR036390 -
Stsc241660g00060 1116 Gene3D - 357 441 IPR042197 -
Stsc241660g00060 1116 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 895 IPR044974 GO:0006952
Stsc241660g00060 1116 Gene3D - 186 350 IPR027417 -
Stsc241660g00060 1116 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Stsc241660g00060 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 451 IPR027417 -
Stsc241660g00060 1116 Gene3D Ribonuclease Inhibitor 571 739 IPR032675 -
Stsc241660g00060 1116 Gene3D Ribonuclease Inhibitor 740 915 IPR032675 -
Stsc241660g00060 1116 Pfam NB-ARC domain 205 439 IPR002182 GO:0043531
Stsc241660g00060 1116 Pfam TIR domain 20 186 IPR000157 GO:0007165
Stsc241660g00060 1116 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 163 IPR035897 -
Stsc241660g00060 1116 Gene3D - 14 185 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241660g00060 Stsc-Chr241660 287541 291704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241660g00060 21 803 WRKY Transcription Factor Family AT4G12020 29.838 3.52e-78 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241660g00060 - - ahf:112751484 1405.96