Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241660g00056 ATGGATCTGCAATCTCCCTTCTCCTCAATTCATTCCTTCAACTATGAACATGAATGGACATACGATGTGTTTCTTAGCTTTAGAGGCAAAGACACTCGCTACGGTTTCACCAGCAATCTTTATGAAGCCCTTTCTCGCAAAGGAATCAACACTTTCTTTGATGATGACGGCATTCAAAGTGGAGACGAAATTACTCCCACACTTGTCAAATCAATTGAAGAGTCCAGGATTGCTATCATTGTCCTCTCTCCTCACTATGCTGCTTCTTCTTTTTGCTTAGATGAGCTTGTTCACATCCTTCGTTACATTAAGAGAAACAATCGGTTGGTTGTGCCGGTTTTCTATGATGTGGATCCTTGTGATGTGCGCCATCAAATAAATAGATTTGGAGAAGCTATGGCTAAGCATGAGCAGAGATTCAAAAACGACTTGAACAAGGTGCAAAAATGGAGGGATGCTCTGCATCAAGTAGCTAATTTGTCTGGCTATCATTTCAAACCCGGGAAAGGATATGAACACAGGTTTATTGGAAACATCGTGGATAACATCTCAAAAAGGATTACGCGACGCCTAGCTTTGCATGTTGCTGATCACCCAGTTGGATTGCAATCCCAAGTGTCAGAGGTAGCTTTGCTTCTAGATGTTGAATCTAATGCTGGAGTTCACATGGTTGGGATATATGGAATTGGGGGAATAGGAAAAACCACTCTTGCTGCTGCTGTTTACAACTTCATTGCTGACCATTTTGAAGATTTATGCTTTCTTGAAAATGTAAGAGAAAATTCAAATAGACACGGTTTAGTACATCTCCAGAATATCCTTCTTTCTGAGATATTAGAAAAGGAAATTAAGCTAGGAAGTGTTAAAAAAGGAACTTCAGAGATACAAAAGACATTATGTCAAAAGAAAGCTCTTTTGGTTCTTGATGATGTTGATGATCCGGAGCAGTTGAAAGCTATTGCTGGAAAACCTGAGTGGTTTGGCTGTGGTAGCAGAGTCATTATTACAACACGGGATAAACATTTGCTAACACTTCATGGCGTGGAAAGAACATTTGAGGTACAAGGTTTAAACGAGGAGGACTCCTTAAATTTGCTTACTTGGAATGCTTTTAAATCTGATGTTGTTAGTCCAAGTTACATGAATGTTTTATCCCGTGTAGTGACTTATGCATCTGGGCTTCCGTTGGCTTTGGAAGTAATAGGTTCTAACTTGTTTGGAAAGGATTCAGAAGAATGGGAATCTGAATGGGAATCAAATAAGTTTTGA 1269 0.3956 MDLQSPFSSIHSFNYEHEWTYDVFLSFRGKDTRYGFTSNLYEALSRKGINTFFDDDGIQSGDEITPTLVKSIEESRIAIIVLSPHYAASSFCLDELVHILRYIKRNNRLVVPVFYDVDPCDVRHQINRFGEAMAKHEQRFKNDLNKVQKWRDALHQVANLSGYHFKPGKGYEHRFIGNIVDNISKRITRRLALHVADHPVGLQSQVSEVALLLDVESNAGVHMVGIYGIGGIGKTTLAAAVYNFIADHFEDLCFLENVRENSNRHGLVHLQNILLSEILEKEIKLGSVKKGTSEIQKTLCQKKALLVLDDVDDPEQLKAIAGKPEWFGCGSRVIITTRDKHLLTLHGVERTFEVQGLNEEDSLNLLTWNAFKSDVVSPSYMNVLSRVVTYASGLPLALEVIGSNLFGKDSEEWESEWESNKF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241660g00056 422 Gene3D - 356 421 IPR042197 -
Stsc241660g00056 422 Gene3D - 188 349 IPR027417 -
Stsc241660g00056 422 Gene3D - 17 187 IPR035897 -
Stsc241660g00056 422 Pfam TIR domain 21 185 IPR000157 GO:0007165
Stsc241660g00056 422 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Stsc241660g00056 422 SMART till_3 20 160 IPR000157 GO:0007165
Stsc241660g00056 422 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 419 IPR027417 -
Stsc241660g00056 422 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
Stsc241660g00056 422 PRINTS Disease resistance protein signature 391 405 - -
Stsc241660g00056 422 PRINTS Disease resistance protein signature 298 312 - -
Stsc241660g00056 422 PRINTS Disease resistance protein signature 223 238 - -
Stsc241660g00056 422 Pfam NB-ARC domain 204 414 IPR002182 GO:0043531
Stsc241660g00056 422 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 418 IPR044974 GO:0006952
Stsc241660g00056 422 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 163 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241660g00056 Stsc-Chr241660 279920 281304 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241660g00056 21 403 WRKY Transcription Factor Family AT4G12020 28.462 8.98e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241660g00056 - - ahf:112751484 576.244