Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241660g00038 ATGCCTACCATGGAAAAGAATTCTGAGCAGACTGAGATTCAATCTGCATTCGACGAGTTGGCTAAGCAGCCTGCTGACTTTGAGCTTCCAGATTCATTTACCAAGACTAAACCTATGGAATATAAATTTATCAAGCGAAATATATATATCTCAAAGAAGTTAAAGAGACGGATTGATGATGGCATATTCTGTTCCTGTACTCCTTCACCTGAATCTCCTAATGTGTGTGGTATTGACTGCCACTGTGGGGTGCTTTTAGCCTGCTGTTCTTCAGCCTGTAAATGTGGGAGCTCCTGTCTTAACAAACCTTTTCAGCGCCGTCGGATGAAAAAGATGAAATTAGTCCAGACTGAGAAATGTGGCTCTGGTATTGTGGCTGCTGAAGATATTAAGCGTGGGGAATTTGTTATAGAATATGTCGGAGAAGTGATTGATGACGAAACTTGTGAAGAAAGACTTTGGAAGATGAAGCATCGTGGGGATTCAAACTTTTACTTGTGTGAAGTTGAGCGAGATACGGTGATTGATGCCACATATAAGGGAAACAAATCTAGATTTATCAATCATAGTTGCTGTCCCAATACTGATATGCAGAAATGGATAGTAGGAGGGGAAACAAGAGTTGGCATTTTTGCCTCCAAAGACATTCGGAAAGGTGAAGAACTTACTTACGACTACCGGTTTGTCCAATATGGTCCAGACCAGGAATGTCACTGCGGTGCTGTTGGTTGCAGGCGTAAGCTGGGTGTCCAACCTACAAAGCCTAAAATGTCAGTTAAATGCCAGGTGGCTTCATCTTCTCTTACATAG 810 0.421 MPTMEKNSEQTEIQSAFDELAKQPADFELPDSFTKTKPMEYKFIKRNIYISKKLKRRIDDGIFCSCTPSPESPNVCGIDCHCGVLLACCSSACKCGSSCLNKPFQRRRMKKMKLVQTEKCGSGIVAAEDIKRGEFVIEYVGEVIDDETCEERLWKMKHRGDSNFYLCEVERDTVIDATYKGNKSRFINHSCCPNTDMQKWIVGGETRVGIFASKDIRKGEELTYDYRFVQYGPDQECHCGAVGCRRKLGVQPTKPKMSVKCQVASSSLT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241660g00038 269 SMART set_7 110 233 IPR001214 GO:0005515
Stsc241660g00038 269 PANTHER SET DOMAIN PROTEINS 15 256 - -
Stsc241660g00038 269 ProSiteProfiles SET domain profile. 110 227 IPR001214 GO:0005515
Stsc241660g00038 269 FunFam Histone-lysine N-methyltransferase 27 265 - -
Stsc241660g00038 269 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 35 269 IPR025787 -
Stsc241660g00038 269 Gene3D SET domain 5 265 IPR046341 -
Stsc241660g00038 269 ProSiteProfiles Post-SET domain profile. 233 249 IPR003616 -
Stsc241660g00038 269 SMART shorttest3 59 109 IPR006560 GO:0005634|GO:0042054
Stsc241660g00038 269 Pfam SET domain 121 226 IPR001214 GO:0005515
Stsc241660g00038 269 SUPERFAMILY SET domain 24 239 IPR046341 -
Stsc241660g00038 269 CDD SET_ASHR3-like 111 249 - -
Stsc241660g00038 269 ProSiteProfiles AWS domain profile. 59 108 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241660g00038 Stsc-Chr241660 201315 204100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241660g00038 89 248 C2H2 Transcription Factor Family AT2G23740 38.333 3.85e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc241660g00038 SET 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241660g00038 - - ahf:112751595 466.463