Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241660g00037 ATGCCTACCATGGAAAAGAATTCTGAGCAGACTGAGATTCAATCTGCATTCGACGAGTTGGCTAAGCAGCCTGCTGACTTTGAGCTTCCAGATTCATTTACCAAGACTAAACCTATGGAATATAAATTTATCAAGCGAAATATATATATCTCAAAGAAGTTAAAGAGACGGATTGATGATGGCATATTCTGTTCCTGTACTCCTTCACCTGAATCTCCTAATGTGTGTGGTATTGACTGCCACTGTGGGGTGCTTTTAGCCTGCTGTTCTTCAGCCTGTAAATGTGGGAGCTCCTGTCTTAACAAACCTTTTCAGCGCCGTCGGATGAAAAAGATGAAATTAGTCCAGACTGAGAAATGTGGCTCTGGTATTGTGGCTGCTGAAGATATTAAGCGTGGGGAATTTGTTATAGAATATGTCGGAGAAGTGATTGATGACGAAACTTGTGAAGAAAGACTTTGGAAGATGAAGCATCGTGGGGATTCAAACTTTTACTTGTGTGAAGTTGAGCGAGATACGGTGATTGATGCCACATATAAGGGAAACAAATCTAGATTTATCAATCATAGTTGCTGTCCCAATACTGATATGCAGAAATGGATAGTAGGAGGGGAAACAAGAGTTGGCATTTTTGCCTCCAAAGACATTCGGAAAGGTGAAGAACTTACTTACGACTACCGGTTTGTCCAATATGGTCCAGACCAGGAATGTCACTGCGGTGCTGTTGGTTGCAGGCGTAAGCTGGGTGTCCAACCTACAAAGCCTAAAATGTCAGTTAAATGCCAGGTATATCAGAATGGAGGTTTGCAAATTGGCAGTTCTCAAGCTGTTGCACGATCGAAGTACTCAAAAGTTTGCATTGGGGAAGTTATTAGGATAAAACACCTTGAAAATGTGAGGTTTGGGCTTATTAAATGGTTTAACAAATATTCCCGAAAACACTCGATCGTGTTTGAAGATGGCTGTGTTGAAATTTATGACATGTCCAAAGAAGACTGGGAACTTACGAGATTTTGA 1017 0.411 MPTMEKNSEQTEIQSAFDELAKQPADFELPDSFTKTKPMEYKFIKRNIYISKKLKRRIDDGIFCSCTPSPESPNVCGIDCHCGVLLACCSSACKCGSSCLNKPFQRRRMKKMKLVQTEKCGSGIVAAEDIKRGEFVIEYVGEVIDDETCEERLWKMKHRGDSNFYLCEVERDTVIDATYKGNKSRFINHSCCPNTDMQKWIVGGETRVGIFASKDIRKGEELTYDYRFVQYGPDQECHCGAVGCRRKLGVQPTKPKMSVKCQVYQNGGLQIGSSQAVARSKYSKVCIGEVIRIKHLENVRFGLIKWFNKYSRKHSIVFEDGCVEIYDMSKEDWELTRF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241660g00037 338 SUPERFAMILY SET domain 24 239 IPR046341 -
Stsc241660g00037 338 SMART set_7 110 233 IPR001214 GO:0005515
Stsc241660g00037 338 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 35 284 IPR025787 -
Stsc241660g00037 338 PANTHER SET DOMAIN PROTEINS 15 266 - -
Stsc241660g00037 338 ProSiteProfiles SET domain profile. 110 227 IPR001214 GO:0005515
Stsc241660g00037 338 FunFam Histone-lysine N-methyltransferase 27 265 - -
Stsc241660g00037 338 Gene3D SET domain 6 266 IPR046341 -
Stsc241660g00037 338 ProSiteProfiles Post-SET domain profile. 233 249 IPR003616 -
Stsc241660g00037 338 Pfam SET domain 121 226 IPR001214 GO:0005515
Stsc241660g00037 338 SMART shorttest3 59 109 IPR006560 GO:0005634|GO:0042054
Stsc241660g00037 338 CDD SET_ASHR3-like 111 249 - -
Stsc241660g00037 338 ProSiteProfiles AWS domain profile. 59 108 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241660g00037 Stsc-Chr241660 201315 209407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241660g00037 89 248 C2H2 Transcription Factor Family AT2G23740 38.333 2.12e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc241660g00037 SET 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241660g00037 - - ahf:112751595 573.933