Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241660g00006 ATGTTGAACATGNNNNNNNNNNTTAAATCACTGTTGGACTTGAAGGCTGCTTTGGATCCTGACAACACCTATCTCTCATCATGGACCATGAATGGCAACCCTTGTGATGGTGCTTCCTTTGAAGGTGTGGGTTGCAATGAACAAGGTCATGTTGCAAATGTTTCTCTGCAAGGAAAAGGTCTCTCTGGGAAGCTTTCACCTTCCATTGCTGGACTTAAGCACCTTACAGGACTCTACTTGCATTATAACTCACTGTCTGGCAACATACCTAAGGAGATTGCAAACTTGACTCAGCTCAGTGATTTGTATCTGAATGTCAATCATCTTTCTGGGGAAATCCCTTCTGAGATTGGAAAGATGGAGAACCTCCAAGTTTTGCAGCTTTGTTATAATCAGTTGTCAGGAAGCATACCTACACAGCTTGGTGATTTGAAAAAGCTTAGTGTTCTTGCTTTGCAATCGAACGAGTTAACTGGTGCAATCCCTGCTAGTCTAGGTGATTTGGGAACGTTGATGAGGCTAGATTTGAGCTCTAATAAGCTATTTGGTTCCATTCCCTCTAGACTAGCTGACGTTACTTCGCTGCAAGTTCTGGATGTTCACAACAATACCCTCTCCGGGAACGTACCGCCTGCTCTTAAGAGACTAGAAGATGGATTTGTGTATGAATCAAATGTGGGGTTATGTGGGGTTGGGTTTTCATCCTTGAGAGCTTGCAATGATTCGGATCATGTCAATCCCAACAGACCTGAACCCTATGGGGCAGGAGTTAATGGTCTATCAAGAGATATCCCAGAAACTGCGAATGTGAAGTTGCCTTGCAATGGAACTCGGTGCCAAACTTCATCAAAATCCAAACACACAACATCTGTTACAGTTGGCATAGTTCTGGTTATGATTGCAGTATCAGCAATTGGACTTCTGTCCTTTACATTATATCGTCGACGGAAGCAAAAGCTTGGAAATGCTTTTGATACATCCGAGAGCCGCCTAAGTACTGATCAAACCAAGGGTATATATAGGAAAAATNNNNNNNNNNAGTATGCTAATGGATGGGACCCTTTAGCTGATAGCAGGAATTTCAATGGAGATAGCCAAGATATGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTAGAGTCAGCAACTCAGTATTTCTCGGATAAGAATTTGTTGGGTAAGAGTAACTTCAGTGCAACATATAAAGGAGTTTTGAGAGATGGGTCTGCTGTTGCTGTTAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAATTTTTGAAGGGACTGAACACTCTGACCTCCCTGAGGAACGAGAATTTAGTGAGGCTGAGAGGATTTTGCTGTTCAAGGGGACGTGGCGAATGCTTCCTTGTCTATGATTTTGTGCCTAACGGAAATTTGACTCGCTACCTAGATGTGAAGGAGGGTAATGGAGAAATCCTGGAATGGTCAACTAGAGTTTCTATTGTGAAAGGCATTGCCAAAGGTATAGCATATCTACATGCATATAAGGCAAACAAACCATCTCTTGTTCACCAAAACATCTCTGCGGAGAAAGTCCTCATTGATCAACGATACAACCCGCTGCTTTCGGATTCAGGCCTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCATTAAAGGCCAGTGCTGCCAAGGGTTATTTGGCTCCCGAGTACACGACTACAGGCAAATTCACAGAGAAAAGTGATGTTTATGCTTTTGGGGTGCTTCTTTTCCAGATCCTAACAGGGAAGCAGAAGATAACTAGCTCGATACGCCTTGCCGTGGAATCATTCAAGTTCGAAGAATTCATCGACCCGAATCTCCATGGTAGATTCTTTGAATACGAGGCAGCTAAACTCGCGAAGATGGCTTTGCTTTGCTCCCATGAGTCTCCCTTTGAAAGGCCAACAATGGAAGCCATTGTTCAAGAACTCAGCAACTGTAGTAGCTGTCTCTGA 1977 0.4284 MLNMXXXXKSLLDLKAALDPDNTYLSSWTMNGNPCDGASFEGVGCNEQGHVANVSLQGKGLSGKLSPSIAGLKHLTGLYLHYNSLSGNIPKEIANLTQLSDLYLNVNHLSGEIPSEIGKMENLQVLQLCYNQLSGSIPTQLGDLKKLSVLALQSNELTGAIPASLGDLGTLMRLDLSSNKLFGSIPSRLADVTSLQVLDVHNNTLSGNVPPALKRLEDGFVYESNVGLCGVGFSSLRACNDSDHVNPNRPEPYGAGVNGLSRDIPETANVKLPCNGTRCQTSSKSKHTTSVTVGIVLVMIAVSAIGLLSFTLYRRRKQKLGNAFDTSESRLSTDQTKGIYRKNXXXXYANGWDPLADSRNFNGDSQDMFQSFRFNLEEVESATQYFSDKNLLGKSNFSATYKGVLRDGSAVAVKSISKTSCKSDEAEFLKGLNTLTSLRNENLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGNGEILEWSTRVSIVKGIAKGIAYLHAYKANKPSLVHQNISAEKVLIDQRYNPLLSDSGLYKLLTNDIVFSALKASAAKGYLAPEYTTTGKFTEKSDVYAFGVLLFQILTGKQKITSSIRLAVESFKFEEFIDPNLHGRFFEYEAAKLAKMALLCSHESPFERPTMEAIVQELSNCSSCL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241660g00006 658 Gene3D Transferase(Phosphotransferase) domain 1 465 657 - -
Stsc241660g00006 658 FunFam Protein NSP-INTERACTING KINASE 2 465 655 - -
Stsc241660g00006 658 SMART serkin_6 386 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241660g00006 658 Pfam Leucine rich repeat N-terminal domain 10 46 IPR013210 -
Stsc241660g00006 658 CDD TM_EGFR-like 288 319 - -
Stsc241660g00006 658 Gene3D Ribonuclease Inhibitor 156 225 IPR032675 -
Stsc241660g00006 658 SUPERFAMILY Protein kinase-like (PK-like) 362 651 IPR011009 -
Stsc241660g00006 658 Gene3D Phosphorylase Kinase; domain 1 356 464 - -
Stsc241660g00006 658 FunFam Protein NSP-INTERACTING KINASE 2 118 240 - -
Stsc241660g00006 658 Gene3D Ribonuclease Inhibitor 6 155 IPR032675 -
Stsc241660g00006 658 ProSiteProfiles Protein kinase domain profile. 386 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc241660g00006 658 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 286 653 - -
Stsc241660g00006 658 Pfam Protein tyrosine and serine/threonine kinase 390 651 IPR001245 GO:0004672|GO:0006468
Stsc241660g00006 658 FunFam Protein NSP-INTERACTING KINASE 2 357 464 - -
Stsc241660g00006 658 SUPERFAMILY L domain-like 13 215 - -
Stsc241660g00006 658 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Stsc241660g00006 658 FunFam Leucine-rich repeat receptor-like kinase 7 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241660g00006 Stsc-Chr241660 52120 55371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241660g00006 9 499 Miscellaneous Gene Families AT4G22730 54.257 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc241660g00006 PK_Tyr_Ser-Thr 6.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241660g00006 - - gmx:100789253 1120.53