Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241659g00044 ATGATGCCCCCAGAGCAAGAAAGCAATAATATTGCACCAAACATTATTAGTCCTGTGGAGGGATCACCATCAGCTGCCACCAATAATAACAAAATCAAACCAAGTTTGGATGATAATAATAACAACAACAATGATGCTGCCATTCATGAACACCATCAACACCAACCAACAACAACACCAGAAACAGCACCACCAAGATTTTTTTCTATTCTTCAACAATCTCTGCGACCTATTACCCTCAAATTTGAGGACGTATCATACACCATAACATATCCAAGGCAAAACAAGAACAATGGCTGCTTCGTACCTCGAGAATCAAAGCACAGAAGGAAGATACTCACCGGCGTCACCGGCGTCGCTCGTCCCGGTGAGCTAACGGCAATGCTGGGGCCCTCCGGGAGCGGCAAGACAACTCTCTTGACCGCCCTCGCTGGTCGCCTCGCCGGAAAGGTTACCGGCTCCATAACTTACAACGGCCGGCACGACACCGCCGCCGTGAAGCGCAAGATAGGCTTCGTCTCCCAAGACGACGTTCTATACCCTCACCTCACCGTCCAAGAAACCCTAAATTACGCCGCCATGCTCAGGCTTCCGAAGACTCTCACCAAGGAAGAGAAGCTCCAGCATGCAGACGTGATCGTCGCGGAACTCGGCCTCACGCGGTGCCGGAACAGTCCCGTCGGCGGCGGAGTGTCGATTATCCGGGGAATCTCCGGCGGAGAGAGGAAAAGAGTGAGTATCGGGCTGGAGATGCTGATAAACCCTAGTTTGTTATTTCTCGACGAGCCTACGTCGGGGCTGGACTCCACGACGGCTCAGATGATCGTGTCGGTGGTGCGAGGGCTCGCCCGCGGCGGTCGGACGGTGGTGACGACGATTCACCAGCCGTCGAGCCGGCTTTACAGGATGTTCGATAAGGTAGTGGTGCTCAGCGACGGGCACCCGATTTATTCGGGTCGATCGGTTCGGGTCATGGAGTATCTTGAATCTGTCGGGTTTGCTCCAGCTTTCAACTTCGTCAACCCTGCTGATTTCCTGCTTGACCTTGCAAATGGCATAGTTGCTGATGTCAAACACGATGATAATGTTGAATACCATGAGGATCAAGCATCAGTCAAACAGTCCCTAATTTCATCTTACAAGAAGAACTTGTATCCTGCTCTTAAAGAAGAGATTCAAAGAAACAACATTGACCCAGTAGTATCATCAGGAACACCAAGAAGTTCTGATAATCAATGGAACACAACCTGGTGGGAGCAATTGAAGGTGTTACTTAAGAGGGGTTTACAAGAGAGAAGACATGAATCCTTTTCAGGCCTTAGAATCTTCCAAGTTTTGTCTGTGTCCATTCTCTCAGGGCTTCTTTGGTGGCACTCTGACCACTCACACATACAAGATCAGGTTGGGCTCCTTTTCTTCTTCTCAATCTTCTGGGGATTCTTCCCTCTGTTCAATGCTATCTTTGCATTTCCTCTGGAGAGGCCAATGCTAATTAAAGAAAGATCATCAGGAATGTACCATCTGTCCTCATACTACGTGGCGCGAATGCTCGGAGACTTGCCAATGGAGCTTGTCCTCCCTACAATCTTTGTAAGCATCAGCTACTGGATGGGAGGACTAAAGCCTTCAGTAGTGACATTTGTGCTAACCCTCTTGATCATGCTTTTCAATGTCCTTGTATCCCAAGGAATCGGCCTAGCACTCGGCGCAATCCTCATGGATGTTAAGCAAGCCACAACTCTAGCCTCAGTGACCATGCTGGTGTTTCTGTTGGCCGGCGGCTACTACATCCAGCAAATGCCACCTTTCATAGCATGGCTGAAGTATATCTCCTTCAGCCATTACTGCTATAAGCTCCTTGTAGGAGTTCAATATCCAGAAAATGATGTGTACGAATGTGGACAAGGATTGCATTGTAGAGTAAGAGATTTTCCTGCTATAAAGTGTTTGGGGATTGAAAATTTGTGGGAAGATGTTGTAACATTGACTCTGATGTTAATTGGATACAGAGTTGTGGCATATTTAGCTTTGAGGATGGGTCAGCCTCATTGA 2052 0.4829 MMPPEQESNNIAPNIISPVEGSPSAATNNNKIKPSLDDNNNNNNDAAIHEHHQHQPTTTPETAPPRFFSILQQSLRPITLKFEDVSYTITYPRQNKNNGCFVPRESKHRRKILTGVTGVARPGELTAMLGPSGSGKTTLLTALAGRLAGKVTGSITYNGRHDTAAVKRKIGFVSQDDVLYPHLTVQETLNYAAMLRLPKTLTKEEKLQHADVIVAELGLTRCRNSPVGGGVSIIRGISGGERKRVSIGLEMLINPSLLFLDEPTSGLDSTTAQMIVSVVRGLARGGRTVVTTIHQPSSRLYRMFDKVVVLSDGHPIYSGRSVRVMEYLESVGFAPAFNFVNPADFLLDLANGIVADVKHDDNVEYHEDQASVKQSLISSYKKNLYPALKEEIQRNNIDPVVSSGTPRSSDNQWNTTWWEQLKVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDHSHIQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYHLSSYYVARMLGDLPMELVLPTIFVSISYWMGGLKPSVVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPPFIAWLKYISFSHYCYKLLVGVQYPENDVYECGQGLHCRVRDFPAIKCLGIENLWEDVVTLTLMLIGYRVVAYLALRMGQPH 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241659g00044 683 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 43 674 - -
Stsc241659g00044 683 CDD ABCG_EPDR 77 319 - -
Stsc241659g00044 683 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 80 337 IPR003439 GO:0005524
Stsc241659g00044 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 328 IPR027417 -
Stsc241659g00044 683 Pfam ABC-2 type transporter 419 625 IPR013525 GO:0016020|GO:0140359
Stsc241659g00044 683 Gene3D - 101 331 IPR027417 -
Stsc241659g00044 683 MobiDBLite consensus disorder prediction 1 64 - -
Stsc241659g00044 683 SMART AAA_5 122 314 IPR003593 GO:0016887
Stsc241659g00044 683 ProSitePatterns ABC transporters family signature. 237 251 IPR017871 GO:0005524|GO:0016887
Stsc241659g00044 683 Pfam ABC transporter 116 265 IPR003439 GO:0005524
Stsc241659g00044 683 MobiDBLite consensus disorder prediction 7 43 - -
Stsc241659g00044 683 FunFam ABC transporter G family member 22 100 331 - -
Stsc241659g00044 683 Pfam ABC-2 type transporter 294 380 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241659g00044 Stsc-Chr241659 404664 409289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241659g00044 120 319 Calmodulin-binding Proteins AT2G36910 25.243 3.60e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241659g00044 K05681 - gmx:100792991 1041.57