Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241659g00039 ATGGCTGAAGGATGTGGTGGGAACTCAGTTGCAACCACTTCTCCTACTTCATTCAATTGGTGGTACCTCCATGCAAATCATCATGCATGGAACAACAACAACAATAATAGTAATAATAATAGTAATCACCAAACAAACCCTAATTCTTCATCATGTTCTTGTGAGGAGGATATATCTGTTTCAACATCCTTCACTAATGCCTCCAACCATTCAAGCCTCACTGTTGATTCATCTAGAAGGCTTCTTGATCCACCTCCTCCTCCTCCAAACCACTTCTTCCCGGAACATGCTGATGATAATCATCTTTGGAGTCATGTTCTATCATCAAACGGGGAGTTACAAAATAATGAAGAAATTGGGGAGAAGTTTCTGGATGCACTATCATCTAAGAACATGACAAGCTCAATGTTTGAAGAACCAGCCTACTGTGACTACTTGAAGAAGCTTGATAGCACTAGTAATAGTTGGGAATATAGTGGTGGTAATGGTGGTGGAGGATCAAGTTCTTCATCATTCAACAACAACAATAATAATAGTTTTGATGAGAAGAATAATAATAATGGTTTCAGTGATGCATTGATTGAGAATAATGAAAGGTTGACCAAATTATCTAATCTTGTTAGCACTTGGTCTATTGCCCCACCTCACCCTCAACTTAGTACTACCCACTTTGAACATCCACCACCAACAAATAATAATAATCAAAATCAATTTCCACAATCTCATGACCCTAATTGTAATTTCAAGCAACAACTACCTTTTATTGGGGATAATTCCACATCATCATATAATAACCCTAATATTAATATTAGTAGCTATGATCAGATGAGCAAGGTGAAGGAAGAATATCATCATCATCATCATCAAAATGGATTATTAATGAATGGTGTTTTTTCAGTGGGAGGAGATAGTATTAGTGGTAATAATAAATTATACCACCATGGTTTGCCAAACATTTCTTCATGCACAAGAAATAATAATATCTCAGATGTTATATCCTTTAATAGTAGGCTTGGGATGAGGCCAGTTCTTGGAATCCATGCACAAAAGGCTTCCATGAAATACATGAATTTATCTGAACCAAAGAAGCACCAACCTCTTCAAACATCATCCCCGATAAATAGAAGTAATAATAATGGAAGAATAGAGGGGACAACAACTCGTGAAGTAAAGAAGAAAAGATCTGAAGAATCTTCAGAAGCAATCTTGAAGAAGCCTAAGCAAGATACATCCACAGCTTCTTCTACAAAGGTGCAAGCACCCAAAGTCAAGCTGGGAGACAAGATCACAGCCCTTCAACAAATTGTGTCTCCATTTGGAAAGACAGACACAGCTTCGGTGCTGTTTGAAGCAATTGGGTACATAAAGTTTCTTCAAGAACAAGTCCAGCTATTAAGCAACCCTTACTTGAAGTCTAATTCCCACAAGGATCCATGGGGAAGCTTGGATAGAAAAGATCATCAAAAGGAGGATGGAAAATTAGACCTTAGGAGCAGAGGGCTTTGTTTAGTTCCAACTTCATGTACTGCTCTTGTTTACAGAGAAAACAGTGGACCTGATTATTGGACACCGGCATACAGAGGATGTTTGTATAGGTGA 1599 0.379 MAEGCGGNSVATTSPTSFNWWYLHANHHAWNNNNNNSNNNSNHQTNPNSSSCSCEEDISVSTSFTNASNHSSLTVDSSRRLLDPPPPPPNHFFPEHADDNHLWSHVLSSNGELQNNEEIGEKFLDALSSKNMTSSMFEEPAYCDYLKKLDSTSNSWEYSGGNGGGGSSSSSFNNNNNNSFDEKNNNNGFSDALIENNERLTKLSNLVSTWSIAPPHPQLSTTHFEHPPPTNNNNQNQFPQSHDPNCNFKQQLPFIGDNSTSSYNNPNINISSYDQMSKVKEEYHHHHHQNGLLMNGVFSVGGDSISGNNKLYHHGLPNISSCTRNNNISDVISFNSRLGMRPVLGIHAQKASMKYMNLSEPKKHQPLQTSSPINRSNNNGRIEGTTTREVKKKRSEESSEAILKKPKQDTSTASSTKVQAPKVKLGDKITALQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQLLSNPYLKSNSHKDPWGSLDRKDHQKEDGKLDLRSRGLCLVPTSCTALVYRENSGPDYWTPAYRGCLYR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241659g00039 532 MobiDBLite consensus disorder prediction 65 96 - -
Stsc241659g00039 532 Gene3D - 422 477 IPR036638 GO:0046983
Stsc241659g00039 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 424 474 IPR036638 GO:0046983
Stsc241659g00039 532 MobiDBLite consensus disorder prediction 33 52 - -
Stsc241659g00039 532 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 182 510 - -
Stsc241659g00039 532 MobiDBLite consensus disorder prediction 217 243 - -
Stsc241659g00039 532 MobiDBLite consensus disorder prediction 361 420 - -
Stsc241659g00039 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 409 458 IPR011598 GO:0046983
Stsc241659g00039 532 MobiDBLite consensus disorder prediction 157 184 - -
Stsc241659g00039 532 CDD bHLH_AtbHLH_like 424 466 IPR045239 -
Stsc241659g00039 532 MobiDBLite consensus disorder prediction 362 384 - -
Stsc241659g00039 532 MobiDBLite consensus disorder prediction 385 404 - -
Stsc241659g00039 532 MobiDBLite consensus disorder prediction 405 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241659g00039 Stsc-Chr241659 371923 376171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241659g00039 21 532 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 31.530 1.03e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241659g00039 - - gmx:100527800 538.11