Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241659g00038 ATGGGAGTCATGAGAGGAGAAGAAAGCCAAAGCCAGATAACACATCAATCATCCTCCATAGCTGCTGCTGCTTCCTCAGCTACCACTCCTCCTCCTCCTCCCTCTTCTGTTCCTCAGAAGAAAAGAAGGAATCAACCTGGAACACCGAATCCAGATGCAGAAGTCATAGCACTATCACCAAAGACACTAATGGCAACAAACAGGTTCATATGCGAGGTTTGCAACAAAGGCTTTCAAAGGGAACAAAACTTACAGCTACACAGAAGAGGACACAACCTACCATGGAAGCTCAAGCAGAAGAGCAACAAAGAGCCAAAAAGAAAGGTTTATCTTTGCCCCGAACCCAGTTGCGTCCACCACGACCCTTCTAGGGCCTTGGGTGACCTCACTGGGATCAAGAAGCATTACTCTCGCAAGCATGGCGAGAAGAAGTGGAAATGTGAGAAGTGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAGACTTGTGGAACAAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCTAGACGTGACAGTTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCTCAAGAGAGTGCAAGACACCCTAATGGCACCATGAACCCTTTAGGAGGGACACATTTGTATGCTGCCACAAACACAAACCACATGACCTTAGGCCTTTCCCAATTAGGCACCCAAATCCCCCAATTCCAAAATCACCAAACCCCCACTCACACCGCCGCCGGCATCCTCCGTCTTGGAAGCGCCGGCGCCGCCAAATTCGAGCACCTAATCCCTCCTTTAAACCATCAATCTCCATCATTTGGACACTCACCCCAATCATCACTCACTAATCCCTCACCTTTCTTCATGAATGACCCAAATCAAGCATTTGAAGACAACAACAACAACAACCAATCTCATCATCATCAACAAGGTTCATCATTATTCTCAAGCAAGCAACTACATGGACTAATGCAACTCCCTGATCTTCAAGGAAACTCCATCAACACCAACTCTAATAATCCTTCCAATCTTTTCAACCTTAGCTTCTTCCCAAACAACAGCAATATCCCTGACCAATTCAACAGTAATAATAACCAACAAGGAACAACAACTTCAACACTCTATGGTGATCATCACCAAGTTGGTTCAGGTTTGTCTTCACTCTTTGGAAATTCATCATCTTCATTGCAACATGAGAACGTGTCCCCTCATATGTCAGCCACTGCATTGCTTCAGAAAGCTGCACAAATGGGTTCAACTACCACCACCAACAACAACAGCAACAACAATGGCTCTTCTTCCATCCTCAGAGGAATGTGTAGTTCTTCCTCAACCAAATCAGAAAGGGAACAACTTGTTATGTCTGATCACATTGCATTTGGAAGTAGTAGTGATCAAAGAAGATCAAGCATGGAAAATGATCACCACCACCAGCAGCACCTTCATGGGTTGATGAACTCCCTTGCCAATGCAGGAAACACTACTACCAGTTCCATATTTGACAATGATGATCACCATCATCAGTTTCATCAGAGCTTAGATGATTCAAGTAACAACACTAATAAGCTTCCTCAGAATCATCTTGGGGTGAGTTTTGGAGGATCTGATAAGTTGACATTGGATTTTCTTGGAGTTGGAGGAATGGTGAGAAACATAAACACTGGAGCATTTTCACAAACACATAGAGAGCAGCAACAACAAGGAATGATGAGTAGCATGAGTTCTTTGGATCCTGACCTGAAATCAGCACAATCAGCACCAAGCCACCGTTTTTGA 1788 0.4424 MGVMRGEESQSQITHQSSSIAAAASSATTPPPPPSSVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPNGTMNPLGGTHLYAATNTNHMTLGLSQLGTQIPQFQNHQTPTHTAAGILRLGSAGAAKFEHLIPPLNHQSPSFGHSPQSSLTNPSPFFMNDPNQAFEDNNNNNQSHHHQQGSSLFSSKQLHGLMQLPDLQGNSINTNSNNPSNLFNLSFFPNNSNIPDQFNSNNNQQGTTTSTLYGDHHQVGSGLSSLFGNSSSSLQHENVSPHMSATALLQKAAQMGSTTTTNNNSNNNGSSSILRGMCSSSSTKSEREQLVMSDHIAFGSSSDQRRSSMENDHHHQQHLHGLMNSLANAGNTTTSSIFDNDDHHHQFHQSLDDSSNNTNKLPQNHLGVSFGGSDKLTLDFLGVGGMVRNINTGAFSQTHREQQQQGMMSSMSSLDPDLKSAQSAPSHRF 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241659g00038 595 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 1 54 - -
Stsc241659g00038 595 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 562 595 - -
Stsc241659g00038 595 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Stsc241659g00038 595 Gene3D Classic Zinc Finger 48 117 - -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 517 532 - -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 418 453 - -
Stsc241659g00038 595 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Stsc241659g00038 595 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 570 IPR031140 -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 270 317 - -
Stsc241659g00038 595 FunFam protein indeterminate-domain 12-like 48 116 - -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 7 26 - -
Stsc241659g00038 595 SMART c2h2final6 110 140 IPR013087 -
Stsc241659g00038 595 SMART c2h2final6 145 165 IPR013087 -
Stsc241659g00038 595 SMART c2h2final6 69 91 IPR013087 -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 273 317 - -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 389 408 - -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 492 534 - -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 360 383 - -
Stsc241659g00038 595 Gene3D Classic Zinc Finger 123 202 - -
Stsc241659g00038 595 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Stsc241659g00038 595 MobiDBLite consensus disorder prediction 418 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241659g00038 Stsc-Chr241659 357502 362742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241659g00038 39 561 IDZ Gene Family AT2G02070 46.021 8.30e-125 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc241659g00038 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241659g00038 K25870 - tcc:18609936 577.4