Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241659g00024 ATGGGTGGTGGTGGGGGTGAGAAGAATTCCAAGGCCATGATGGTTGTGGCATGTTTGGCTGAGTCCATAAAGGAGATTTCAGGGCTTCCAGAGTGCAACAACGTTTGCAAGAGGATGTATGGGAATCTGGTTAGGAGGGTGAAGCTTTTGAGCCCTCTCTTTGAGGAATTGAAGGACAGTGATGATGGGTCCCTCCTCAGTGATGAACAAGTTGCAGCCTTTGAGTGTCTCAAGGTTGCATTGGATGAAGCTAAGACCCTTCTTAACTCTGTGAACCAAGGGAGTAAGCTTTATCAGGCTTTGCAGAAGAATGATACAAGAGATAAGTTCCAACAAATAACTGAAAAAATTGAAGAGGCATTGTGTGGAATTTCCTACAACAAACTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAACTCCTACAGAATTTGCAGATTTACAGCTAGACTTAGATATGGAAGTAGCACAGAAAGAAAAAGACCCTGATCCTGCTGTCCTCAAAAGACTTTCTGAGAAGTTGCATTTGAGGACTATAAATGATCTGAAGAAAGAGTCTGCTGAATTACACGAATTGGTTATCACAAGTGGCGGGGAACCGGGGGACTATTTTGAGACAATTACATCCCTTCTTAGGAAGATGAAGGACTGTGTGCTAACCGAAAATCCCGAGGTTGATAGCAACGAGGGTGAAAAAATGCCAATTAAGCACAGGTCTCCTGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTGATGAAAGATCCTGTAATTGTCTCTACTGGTCAGACATATGAAAGATCATGCATTCAGAAATGGCTTGATGCTGGTCATAAAACCTGCCCCAAGACGCAGCAGACACTTCTGCATACTGCCCTTACCCCTAACTATGTTTTGAAGAGTCTGATCGCTTTATGGTGTGAAAGCAACGGTGTCGAGCTACCAAAGAAGCAGGGGAGCTGCAGAGCAAAGAAATCCGGAAGCAATCATTCGGATTGTGACAGAACTGCTATTAATGCGTTATTGGATAAACTAGCAAATGGTGATATTGAGCAGCAGAGAGCAGCCGCGGGTGAACTCCGGTTGCTGGCAAAAAGGAATGCAGATAACAGAGTGTGTATTGCCGAGGCAGGAGCAATACCACTTCTTGTGGAATNNNNNNNNNNAGATCCTCGAACGCAGGAGCATGCTGTTACAGCACTCCTCAATCTTTCAATCAATGAGAGCAACAAAGGGACTATAGTAAATGCAGGAGCTATACCGGATATCGTAGATGTATTGAAAAGTGGCAGCATGGAGGCTAGAGAAAACGCAGCCGCAACACTCTTTAGCTTATCTGTTCTAGATGAGAACAAGGTTGCGATCGGAGCAGCTGGAGCTATCCCAGTTCTTATAAAGTTACTTTGTGAAGGTACTCCGAGAGGTAAGAAGGATGCCGCGACTGCCATCTTCAATCTTTCCATCTACCAAGGAAACAAAGCAAGAGCCATCAAAGCCGGTATAATAGCCCCATTGATGCGATTTTTGAAGGATGCCGGGGGTGGTATGGTAGATGAAGCACTGGCTATAATGGCAATCCTTGCAAGCCACCATGAAGGAAGGATCGCGATTGGTCAGGCTGAGCCAATCCCTATTCTAGTGGAGGTTATACGAACGGGGTCTCCACGCAACAGGGAGAACGCTGCAGCCGTATTGTGGTCGCTTTGCACGGGAGATCTAATGCAATTGAAACTAGCAAAGGAACTTGGCGCAGAAGAAGCGTTGCAAGAATTATCTGAAAATGGCACTGATAGAGCCAAGAGAAAAGCAGGAAGCATATTGGAACTCTTACAGCGGATGGAAGGGGATCAGAATGTGCAAAGTTCTTAG 1908 0.4481 MGGGGGEKNSKAMMVVACLAESIKEISGLPECNNVCKRMYGNLVRRVKLLSPLFEELKDSDDGSLLSDEQVAAFECLKVALDEAKTLLNSVNQGSKLYQALQKNDTRDKFQQITEKIEEALCGISYNKLEISEEVQEQIELVHAQFKRAKTPTEFADLQLDLDMEVAQKEKDPDPAVLKRLSEKLHLRTINDLKKESAELHELVITSGGEPGDYFETITSLLRKMKDCVLTENPEVDSNEGEKMPIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGSCRAKKSGSNHSDCDRTAINALLDKLANGDIEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVEXXXXDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDENKVAIGAAGAIPVLIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAIKAGIIAPLMRFLKDAGGGMVDEALAIMAILASHHEGRIAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCTGDLMQLKLAKELGAEEALQELSENGTDRAKRKAGSILELLQRMEGDQNVQSS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241659g00024 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 391 432 IPR000225 GO:0005515
Stsc241659g00024 635 SMART arm_5 461 501 IPR000225 GO:0005515
Stsc241659g00024 635 SMART arm_5 502 542 IPR000225 GO:0005515
Stsc241659g00024 635 SMART arm_5 420 460 IPR000225 GO:0005515
Stsc241659g00024 635 SMART arm_5 380 419 IPR000225 GO:0005515
Stsc241659g00024 635 SMART arm_5 543 583 IPR000225 GO:0005515
Stsc241659g00024 635 Gene3D - 9 127 IPR036537 GO:0007166
Stsc241659g00024 635 ProSiteProfiles U-box domain profile. 252 326 IPR003613 GO:0004842|GO:0016567
Stsc241659g00024 635 Gene3D - 337 526 IPR011989 -
Stsc241659g00024 635 Gene3D - 527 634 IPR011989 -
Stsc241659g00024 635 SMART Ubox_2 256 319 IPR003613 GO:0004842|GO:0016567
Stsc241659g00024 635 SUPERFAMILY RING/U-box 252 328 - -
Stsc241659g00024 635 FunFam RING-type E3 ubiquitin transferase 12 127 - -
Stsc241659g00024 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Stsc241659g00024 635 PANTHER U BOX DOMAIN-CONTAINING 38 623 - -
Stsc241659g00024 635 SUPERFAMILY ARM repeat 348 623 IPR016024 -
Stsc241659g00024 635 FunFam RING-type E3 ubiquitin transferase 335 629 - -
Stsc241659g00024 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 326 IPR013083 -
Stsc241659g00024 635 CDD MLKL_NTD 16 147 - -
Stsc241659g00024 635 FunFam RING-type E3 ubiquitin transferase 253 326 - -
Stsc241659g00024 635 Pfam Armadillo/beta-catenin-like repeat 462 500 IPR000225 GO:0005515
Stsc241659g00024 635 CDD RING-Ubox_PUB 254 306 IPR045210 -
Stsc241659g00024 635 Pfam U-box domain 253 323 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241659g00024 Stsc-Chr241659 194461 197995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241659g00024 19 628 U-box Gene Family AT3G54850 65.850 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241659g00024 - - gmx:100777452 1021.54