Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241659g00018 ATGAGAAAGTGGAGCAGATCAAAGCATTTGCTATGGCTGCTGGTTCTTTGGTTACTACCCTTTGTGGTTCAATGCCAAGAAGTGAATGACTATGACCAAATTGATAACCCTTCTGTTCTTCCACTTGTTACTCAGCTTGTCTATAGCAGACTTTCCAATCTGACTTCACTTCTCAGCCAGGAAATAGCTACTCACTCCACTTTCTGTGTCAAAGATCCGGATGCTGATTGGAACCAAGCATTTAATTTCTCATCAGATTTGAGTTTCCTTGCTTCTTGCATTAAGAAGACTAAAGGAGATGTCACAAGACGTTTGTGTACAGCAGCAGAGGTGAAGTTTTACCTAACCAATTTGTTGGAGAGATCCACAAGTTCCAATTACTTGAAGCCTAACAAGAACTGCAATTTATCTTCATGGTTCCCCGGTTGCGAGCCGGGTTGGGCCTGCAGTGTTCCTTCATCCCAGAAGGTTGACCTTAGAAATTCAAAGGAGATTCCTTCAAGAACTTCAAACTGCCAGCCTTGTTGTGAAGGATTCTTCTGCCCTCATGGAATCACATGCATGATGCCATGCCCTTTAGGTTCCTATTGCCCTCTTGCTAAGCTAAACAAAACAACCGGCGTATGCGAACCATATCTTTATCAGCTGCCTCCAATGCAGCCAAACCATAGCTGTGGAGGTGCAAATGTATGGGCTGATGTTAGTAGCAGCAGTGAGATGTTTTGCTCAGCAGGATCCTATTGTCCAACAACAACAAAAACAGTTCCTTGTAGTAGTGGGCATTACTGCAGAATGGGTTCAACTTCTGAGAAAAGATGCTTCAAGTTGACTTCTTGCAACTCAAACACTGCTACCCAAAATATGCATGCATATGGGATCATGCTCATTGCTGCATTGAGCACTTTGCTGCTCATTATTTACAACTGTTCTGACCAAATTCTCACTACTAAGGAAAGGAGAATGGCCAAATCTAGAGAAGCAGCTGCTAGAAATGCAAGGAGCACTGCCACCGCGCGCCAAAGATGGAAACTTGCTAAAGATGCTGCTAAGAAGGGTGCGACCGGGCTACAAGCTCAACTTTCGCGCAAATTCTCTCGTAAGAATGACGAAACAAATCTCGAAACAGTTAAAATTTTGGATCAAGCCACTACTAGTTCTAGCACAGCTACGATTTCATCTGTGCTGTTGGAGGACATTGATAAAGAATCTAGTGGCTTTAAGCAGACCATACATGAAATTCTAAAGGAACCTGATATTGAGGACAATTTCAATGTAAAAATGGAAACTAGAACTAAAAATTTGCCACCAAAGGGAAAACAACCATTGCATACACATAGCCAAATATTTAACTATGCATATACTGAGCTCGAAAAGGAGAAGGCTCAGCAACAAGAAAACAAGAACCTTACCTTCTCAGGAGTGATTAAAATGGCTATCAACACTGAAAAAAGAAAGAGGCCTTTAATTGAGATTTCTTTCAAAGACTTGACTCTTACATTGAAAGCTCGAAACAAGCCTATACTGAGATGTGTTACTGGGAAGATTAAACCCGGCCGAATCACAGCTGTCATGGGACCATCAGGGGCTGGCAAGACAACATTTTTGTCAGCTCTAGCTGGAAAGGCATTTGGATGCTTTGCGAGTGGTTCGATTCTTATAAATGGAAGGAATGAATCAATCCACTCCTTCAAGAAAATTATTGGTTTTGTTCCACAAGATGATGTAGTTCATGGAAACCTGACAGTGGAAGAAAATCTCTGGTTCAGTGCACAATGCAGGCTATCTGCTGACTTGTCAAAACCAGAAAAGGTTCTGGTTCTTGAAAGAGTTATTGAATTCTTGGGGCTTCAGTCTGTGAGGAATTCCTTGGTTGGAACAGTGGAAAAGCGAGGGATCTCTGGCGGCCAAAGGAAGCGTGTAAATGTTGGATTGGAAATGGTTATGGAACCTTCACTTCTGATCTTGGATGAACCAACTTCTGGTTTGGACAGTGCATCATCTCAGCTTCTTTTAAGAGCTCTAAGACGCGAAGCGCTCGAGGGAGTTAACATTTGCATGGTGGTTCACCAACCCAGCTATGCTTTATTCAAGATGTTTGATGACTTGATACTTCTGGGAAAAGGTGGACTTACTGTCTATCATGGACCTTCCAAGAAAGTTGAAGAATACTTTTCTGGACTTGGGATTCATATACCGGAGCGAATCAACCCTCCGGATTACTTCATCGACATCTTGGAGGGCATAGTAAAACCTGGTGGTAGCTCAGGAGTGAGGTATAAAGAGCTACCAGTTAGATGGATGCTTTATAATGGATATCCAATACCTCATGATATGCAGCAGAGTGCTGAACAGTATGACACGTCCGTAAGCATGAATTCAGCTATAGATTCCAATTCATATGATCATGACGGAAAAACCTTTGCTGGAGATCTGTGGCATGATGTGAGAAACAATGTGGAACTGCAGGGGGAGAAGATCAGACTCAATTTCTTGAAATCCAAGGATTTATCTAACCGGAGAACTCCCGGAATATTCAAGCAATATAAGTACTTTCTTATAAGGGTTGGGAAGCAGAGATTAAGGGAAGCTAGCATCCAAGCCATAGATTATCTGATTTTGTTACTTGCTGGAGCATGCTTAGGAACTCTTACCAAAGCAAGTGATCAAACATTTGGTGCAGCTGGATACACCTATACAGTGATTGCAGTATCTCTTCTGTGCAAAATTGCTGCCTTAAGATCATTCTCTCTGGACAAGTTACACTACTGGAGGGAGAGTGATTCTGGGATGAGTAGCTTGGCTTATTTTCTCTCAAAAGACACAATTGATCAATTCAATACTGTGATCAAGCCTGTGGTGTACCTCTCAATGTTCTATTTCTTCACCAATCCAAGATCTTCTTTTGCTGATAACTATGTTGTGCTGCTTTGCCTTGTGTATTGTGTTACTGGCATAGCATATGCACTGGCCATACTTTTTGAACCTGGTGCAGCTCAGCTGTGGTCAGTACTACTTCCTGTTGTTTTGACTCTGATTGCAACACAACCAAAAGATAGTAAAATTTTGAAGGGTATAGCTAATTTATGCTACTCTAAATGGGCTTTACAAGCATTTGTGGTTGCAAATGCTGAAAGGTATCAGGGAGTTTGGTTCATAACTCGTTGTGGTTCACTAATGAAAAGTGGGTATAATCTTCATTATTGGAATTTGTGCATATCAATCCTCATTCTTATGGGGGTAATTGGCAGGGCAATAGCATTTTTCTGTATGGTCACCTTTCAAAAGAAGTAG 3291 0.4169 MRKWSRSKHLLWLLVLWLLPFVVQCQEVNDYDQIDNPSVLPLVTQLVYSRLSNLTSLLSQEIATHSTFCVKDPDADWNQAFNFSSDLSFLASCIKKTKGDVTRRLCTAAEVKFYLTNLLERSTSSNYLKPNKNCNLSSWFPGCEPGWACSVPSSQKVDLRNSKEIPSRTSNCQPCCEGFFCPHGITCMMPCPLGSYCPLAKLNKTTGVCEPYLYQLPPMQPNHSCGGANVWADVSSSSEMFCSAGSYCPTTTKTVPCSSGHYCRMGSTSEKRCFKLTSCNSNTATQNMHAYGIMLIAALSTLLLIIYNCSDQILTTKERRMAKSREAAARNARSTATARQRWKLAKDAAKKGATGLQAQLSRKFSRKNDETNLETVKILDQATTSSSTATISSVLLEDIDKESSGFKQTIHEILKEPDIEDNFNVKMETRTKNLPPKGKQPLHTHSQIFNYAYTELEKEKAQQQENKNLTFSGVIKMAINTEKRKRPLIEISFKDLTLTLKARNKPILRCVTGKIKPGRITAVMGPSGAGKTTFLSALAGKAFGCFASGSILINGRNESIHSFKKIIGFVPQDDVVHGNLTVEENLWFSAQCRLSADLSKPEKVLVLERVIEFLGLQSVRNSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQLLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLGKGGLTVYHGPSKKVEEYFSGLGIHIPERINPPDYFIDILEGIVKPGGSSGVRYKELPVRWMLYNGYPIPHDMQQSAEQYDTSVSMNSAIDSNSYDHDGKTFAGDLWHDVRNNVELQGEKIRLNFLKSKDLSNRRTPGIFKQYKYFLIRVGKQRLREASIQAIDYLILLLAGACLGTLTKASDQTFGAAGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSKDTIDQFNTVIKPVVYLSMFYFFTNPRSSFADNYVVLLCLVYCVTGIAYALAILFEPGAAQLWSVLLPVVLTLIATQPKDSKILKGIANLCYSKWALQAFVVANAERYQGVWFITRCGSLMKSGYNLHYWNLCISILILMGVIGRAIAFFCMVTFQKK 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241659g00018 1096 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 244 1083 - -
Stsc241659g00018 1096 SMART AAA_5 517 709 IPR003593 GO:0016887
Stsc241659g00018 1096 Pfam ABC transporter 510 660 IPR003439 GO:0005524
Stsc241659g00018 1096 CDD ABCG_EPDR 489 715 - -
Stsc241659g00018 1096 ProSitePatterns ABC transporters family signature. 632 646 IPR017871 GO:0005524|GO:0016887
Stsc241659g00018 1096 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 491 732 IPR003439 GO:0005524
Stsc241659g00018 1096 FunFam ABC transporter G family member 24 485 727 - -
Stsc241659g00018 1096 Gene3D - 489 726 IPR027417 -
Stsc241659g00018 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 715 IPR027417 -
Stsc241659g00018 1096 Pfam ABC-2 type transporter 689 1096 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241659g00018 Stsc-Chr241659 113573 119356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241659g00018 491 710 Calmodulin-binding Proteins AT2G36910 25.000 2.76e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241659g00018 - - gmx:100798807 1794.25