Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00045 ATGGATTCATCAAACCAGAACCAACCTTGTCCCAAACAAACCTTTGATCACTTATTCACAAAACCTCCTGCTGATGAATCAGAATCAGAACCACCCCCTTCCGAGACACCCCACACCATGGACCCTAGAAGGTATCAATTAGAAGTATTTGAAGTTGCAAAGAAGAGGAATACAATAGCAGTATTAGATACAGGTGCTGGTAAGACCTTGATAGCTGTGTTGCTTATAAAAAGCATTGGTGAAGCTGTCAGGTCCGGTGGCGCCAAAAAGTTGATTATCTTCTTAGCTCCAACCGTTCATCTTGTCAACCAGCAATATAAGAATATAAAAGATCTTACGGATTTTCAAGTTCAGGAGTATTATGGGGCAAAAGGAGTGGATGCATGGGATTTAAATGTCTGGGAGAAGGAAATCAGTGAAAATGAGGTAATGGTTATGACACCCCAGCTTCTTTTGGATGCCCTAAGAAAGGCTTTCTTGAAGATAGAATCAGTATGCTTGATGATTATTGATGAGTGTCATCGAGCAACTGGTAACCATCCGTATGCAAAAGTAATGAAGGAATTCTATCACAAAGCTGATGAAAAGCCTAAAATTTTTGGAATGACAGCATCACCTGTGGGTAAAAAAGGTGTCTCCTCTACTGTGGATTGTGAGGGTCAGATATCAGAACTTGAAAGTATCTTGGATTCTCGGAGATATACTGTAGAAGATAGGACTGAGATGGAAGTATATATACCTTCTGCAAAAGAAAGTTGTAGATATTATGACCAGGCACAATTCCCTGCTTTGAGTTTGAAGCCAAAGATTGAAGACTTGTGGTCCAAGTCTGCTGCATTGCTATCAGAATTGCAAAGCTCAATTGAAAGTAACTATAAGGATGTGGAGAATAAATTAAAGACGCTGCATAAGCGGATGTCTAATGAACTTGCAAAAGTCTTGTATTGCCTTGAAGATCTTGGCCTCCTATGTGCTTATGAGGCTGTTAAAATATGGCATGAAAGTTTCTCCAAGGTTGAAGGAGAGTGTGAAGTTTACCGAAAAGGTTTTAGCCAGTGCAAAGCATTCATTGATGAAGTCATGCAAATAGTTGAAAAATCCCTCTCTCTTGATGATAACAAGATTCCAGAGCTTGATTTTGATTTTTCAAAGGCAGTAGACTTGGGATACTTATCTCCCAAATTGCTTGAACTTATTAAACTCATCCAATCATTTGGAGATTCGTGTGAGGTATTGTGCCTTGTTTTTGTTGAAAGAATCATCACAGCAAAAGTGATTGAAAGATTTATAAAGAAAGTTCCACAAATATCTCATTTCACGGTTTCCTATTTAACCGGAAACAATACCTCAGCTGGTTCACTGAATGCTAAGAAGCAGAAGGAAATATTGGATTCTTTTCGTTCTGGAAAGGTCAATATATTATTTACTACTGACGTAATTGAGGAAGGAATTCATGTGCCGAAGTGCTCATGTGTGATACGTTTTGACATACCGAAGACAGTTCGCAGTTATGTCCAATCTCGGGGAAGATCTAGGCAGGATAGCTCCCAATTTATTGTCATGTTGGAGAGGGGAAACATTGATCAAAGAAATAAACTGTTTGACATCATCAGGAGTGAGCGATCCATGACTGAAGCGGCTATATATAAAGAAAATGATGCTTCTAATTTAAGGGTGATTACGGAAGTGAAATCACATGTATACTATGTTGAGTCTACCGGAGCGTCAGTCACCTTGGATTCAAGTGTTAGTCTTTTAAATCGATATTGTGAAAAGCTCCCATGTGATGAGTACTCCCGTGCAAAGCCCAATTTTGAGTTCCTACCTTTGGAAGGGGCTTACAAGTGTAAATTAACATTACCACCTAATGCGGCTTTCCAAACAATAGTCGGTGCCGTAGGTAAAGATGTCCGTTTGGCAAGGAATCTTGTCTGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGCATGCCTTAAATGATCATCTTGTCCCTTTCACTGAAGAGCCTCCAGAAGCTGAAGATAGTGTGCAAAACAAAGAATTGGGTACTGGTTCAGGTTCAGGTGCAGGAACCACTAGAAGAAAAGAATTACATGGCACAGCCAGCATTCAAGCATTATGTGGTACAATTGAAGACAAACTAGATGGAGCCAAATTTTATGCCTATAGATTTGATTTCAAATGCAGCATTGTCAGTGAAATTTTCTCAGGATTTGTACTCCTGATTGAGTCAAAGTTTGACGACGATGTTGGAAATATTGAATTAGATCTTTATTTGATCAAAAAGACCGTAAAGGCTTCCTTATCTTTCTGTGGGCATGTTGATTTGAATGCTGAACAGGTTATGTATGCGAAATGCTTCCATGAGGTTTTTTTCAATGGTTTGTTTGGGAGATTGGTTCATTGGTCCAAATCAGTAAAAGGAGTAAAGGAATTCTTACTTCAGATAGACACAAAATCACTGTGGAGTCCACACTTCTATTTGCTTCTACCGCTACAAAAAGGGAATGATGAATGTAAAGGATCTTTAGAAATAAATTGGTCCGGTATAAGTTCTTGTGCTTCTGCTGTTGAATTTTTAAGGAACATGTTTTCATCGGTTGCTGGAGATTGTGATGGTGGCAGTAAAATTGTGTCGCCTTGTGATACCAATTCATCGAAGGAGGAATGTGAAGGCACAGATAAAATTCACTTTGCTAATTGTGTAGTTGATGCTAACAGTATAAAGAACCGGGTTGTGTTGGCCATTCACACTGGGAGAATGTATTGCATTCTTGAAGCAGATAACAACCTATGCGCTGAAAGTCCGTTTGATGGAAATGATGAAAAGTCTCCGGAGAACCACATTACCTTCGCAGACTACTACAAGAAAAGGTATGGGATTGCTATGAAACATCCCCGACAACATTTATTGCGTTTGAAGCAAAGTCATAATGCACACAATGTTCTTTTGAATTTCTATGAGGAAGATGAGAAGCAAATTGGCCCAGCAAACAGCAAAATGCCAGCTCATGTTCATATTCCACCCGAGCTTTTATTTATTCTTGATGTTAAAAGACATGTTTTGAAGTCAATGTACTTGCTACCATCATTGATGCATCGTCTTGAATCCCTCGTGTTGTCAAGTCAGCTTAGACAAGAGATTGGTCAGACTAGCAATTTCAACATACCTAGCTCTCTGATTCTAGAAGCACTGACAACATTAAGATGTTGTGAAAAGTTTTCAATGGAACGTCTTGAGTTGCTAGGAGATTCTGTTCTTAAGTATGTAGTGAGCTGTCACCTCTTTCTTAAATATCCTAAGAAACATGAAGGGCAATTATCTGAAAGGCGGAAGTGGGCTGTTTGTAATTTAACCCTGCATACTCTGGGAATAAATCGCAAATTACAGGGGTATATCCAAGATTCTGCATTTGAACCACGACGTTGGGTTGCGCCAGGACAGCATCCAAAAGTTGTGGTCGGAAAGCTCTGTGACCGGGGTCACCGCTGGATGTGTTCAAAGACAATTTCGGATTGTGTTGAAGCTCTTATTGGAGCTTACTATGTGGGTGGTGGACTAACTGCTGCACTACATATCATGAAGTGGCTTGGCATTGATTCTGAGCTAGAACCATCCTTGGTTGACGAAGCCATCGCTGCTGCGTCTCTCCATACATGTGTACCAAAACTGGATGAAATTGCAACCCTTGAAAAGAAAATTGGGTATGAATTTTCCGTTAAGGGACTCTTACTTGAGGCAATGACACATTTGTCCGAGGCTGAACTTGGGATTGGTTGCTGCTACGAGAGGCTTGAATTTCTTGGCGACTCTGTATTGGATCTTCTTATTACGTGGCATCTTTATCAGACGCATGAAGATATTGATCCAGGAGAGCTGACCGACTTGCGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCCGTTAGACGAAACCTTTACCCACATCTTCTGCATAGCTCTGGAGTTTTGTTGAGCCAGATATCAGAATATGTTAAGGTTATTTCTGAATCAGAGACCAATACCAGATCACTCCCAGGCATTAAAGCCCCCAAGGCACTTGGAGATCTAGTGGAAAGTATTGCCGGGGCTATACTAGTTGATACCAAGCTCAATCTTAATGATTTGTGGAGAATTTTCTATCCTCTGTTGTCTCCCATTGTTACCCCTGATAAACTTGAGTTGCCTCCGTTGCGTGAACTAATTGAATTATGTGACTCTCTTGGATATTTTATCAAAGAAAATTGTAAAAGGAAGGGAACTACGGTGCATGCTGAGCTTAGTGTACAACTGCAAAATGCACTTTTAGTTCGCGAGGGAAAGGGAATAAATAAGAAAATAGCAAAAGGAGAAGCTGCATTTCACTTGTTGGAAGATCTCAAGAAGAAAGGAATTTCACATGGCAGTAGCATGCCAAAGAGAAAAAGAGAGAATCCTGACTATCTACACGATTCATCTAATCCTGAAACCGATATTGGTATTTGCACTGGTCTAACTGACGGAGATTCGAGAAAGAGGGCAAAAGTGGATGAAACTAACAGAGGTGAAATTGCATCCACTGTTTCTTTGCCCCACAAAGAGTCATCTACTGAGGACTCTGATTCCATTCCAGTTATTGCATCTATTAATATGAAGAAAGGAGGACCCCGAACCACACTATATGAACTCTGCAAGAGATTACAGTGGCCATTGCCAGAATTTGATGCAACAGAGTATAAAGATAGAACCTTGTTCAAATCCTGCGAAGCTCTGGAAGGAACGAAGGGAATCAACTGCTTTGTGTCAACAATAACCTTGTGCATACCGAATGATGGTAATATAGAATGCAAAGGAGAAGCCAGAGCTGATAAGAAGAGCTCATATGACTCTGCTGCAATTGAAATACTTCATGAGCTACAACGACTGAGGAAGCTTAAGATCGGCGATACTTAG 4938 0.4016 MDSSNQNQPCPKQTFDHLFTKPPADESESEPPPSETPHTMDPRRYQLEVFEVAKKRNTIAVLDTGAGKTLIAVLLIKSIGEAVRSGGAKKLIIFLAPTVHLVNQQYKNIKDLTDFQVQEYYGAKGVDAWDLNVWEKEISENEVMVMTPQLLLDALRKAFLKIESVCLMIIDECHRATGNHPYAKVMKEFYHKADEKPKIFGMTASPVGKKGVSSTVDCEGQISELESILDSRRYTVEDRTEMEVYIPSAKESCRYYDQAQFPALSLKPKIEDLWSKSAALLSELQSSIESNYKDVENKLKTLHKRMSNELAKVLYCLEDLGLLCAYEAVKIWHESFSKVEGECEVYRKGFSQCKAFIDEVMQIVEKSLSLDDNKIPELDFDFSKAVDLGYLSPKLLELIKLIQSFGDSCEVLCLVFVERIITAKVIERFIKKVPQISHFTVSYLTGNNTSAGSLNAKKQKEILDSFRSGKVNILFTTDVIEEGIHVPKCSCVIRFDIPKTVRSYVQSRGRSRQDSSQFIVMLERGNIDQRNKLFDIIRSERSMTEAAIYKENDASNLRVITEVKSHVYYVESTGASVTLDSSVSLLNRYCEKLPCDEYSRAKPNFEFLPLEGAYKCKLTLPPNAAFQTIVGAVGKDVRLARNLVCLEACKKLHQMHALNDHLVPFTEEPPEAEDSVQNKELGTGSGSGAGTTRRKELHGTASIQALCGTIEDKLDGAKFYAYRFDFKCSIVSEIFSGFVLLIESKFDDDVGNIELDLYLIKKTVKASLSFCGHVDLNAEQVMYAKCFHEVFFNGLFGRLVHWSKSVKGVKEFLLQIDTKSLWSPHFYLLLPLQKGNDECKGSLEINWSGISSCASAVEFLRNMFSSVAGDCDGGSKIVSPCDTNSSKEECEGTDKIHFANCVVDANSIKNRVVLAIHTGRMYCILEADNNLCAESPFDGNDEKSPENHITFADYYKKRYGIAMKHPRQHLLRLKQSHNAHNVLLNFYEEDEKQIGPANSKMPAHVHIPPELLFILDVKRHVLKSMYLLPSLMHRLESLVLSSQLRQEIGQTSNFNIPSSLILEALTTLRCCEKFSMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSERRKWAVCNLTLHTLGINRKLQGYIQDSAFEPRRWVAPGQHPKVVVGKLCDRGHRWMCSKTISDCVEALIGAYYVGGGLTAALHIMKWLGIDSELEPSLVDEAIAAASLHTCVPKLDEIATLEKKIGYEFSVKGLLLEAMTHLSEAELGIGCCYERLEFLGDSVLDLLITWHLYQTHEDIDPGELTDLRSASVNNDNFAQVAVRRNLYPHLLHSSGVLLSQISEYVKVISESETNTRSLPGIKAPKALGDLVESIAGAILVDTKLNLNDLWRIFYPLLSPIVTPDKLELPPLRELIELCDSLGYFIKENCKRKGTTVHAELSVQLQNALLVREGKGINKKIAKGEAAFHLLEDLKKKGISHGSSMPKRKRENPDYLHDSSNPETDIGICTGLTDGDSRKRAKVDETNRGEIASTVSLPHKESSTEDSDSIPVIASINMKKGGPRTTLYELCKRLQWPLPEFDATEYKDRTLFKSCEALEGTKGINCFVSTITLCIPNDGNIECKGEARADKKSSYDSAAIEILHELQRLRKLKIGDT 1645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00045 1645 SMART ultradead3 38 237 IPR014001 -
Stsc241658g00045 1645 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1441 1464 IPR014720 -
Stsc241658g00045 1645 Pfam Ribonuclease III domain 1263 1371 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 Pfam Ribonuclease III domain 1077 1185 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 PANTHER DICER-RELATED 56 1469 - -
Stsc241658g00045 1645 Gene3D - 387 549 IPR027417 -
Stsc241658g00045 1645 Gene3D paz domain 892 1014 - -
Stsc241658g00045 1645 Pfam Type III restriction enzyme, res subunit 53 206 IPR006935 GO:0003677|GO:0005524|GO:0016787
Stsc241658g00045 1645 CDD RIBOc 1243 1393 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 SMART helicmild6 424 514 IPR001650 -
Stsc241658g00045 1645 ProSiteProfiles PAZ domain profile. 908 1016 IPR003100 GO:0005515
Stsc241658g00045 1645 MobiDBLite consensus disorder prediction 1467 1535 - -
Stsc241658g00045 1645 Pfam PAZ domain 904 1036 IPR003100 GO:0005515
Stsc241658g00045 1645 ProSiteProfiles Ribonuclease III family domain profile. 1227 1372 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 MobiDBLite consensus disorder prediction 1467 1486 - -
Stsc241658g00045 1645 SUPERFAMILY PAZ domain 905 1016 IPR036085 GO:0005515
Stsc241658g00045 1645 FunFam Endoribonuclease dicer-like protein 38 276 - -
Stsc241658g00045 1645 FunFam Endoribonuclease dicer-like 1 577 673 - -
Stsc241658g00045 1645 SUPERFAMILY RNase III domain-like 1226 1392 IPR036389 GO:0004525|GO:0006396
Stsc241658g00045 1645 Gene3D Dicer dimerisation domain 577 674 IPR038248 -
Stsc241658g00045 1645 Gene3D - 37 278 IPR027417 -
Stsc241658g00045 1645 CDD DEXHc_dicer 42 238 - -
Stsc241658g00045 1645 CDD RIBOc 1059 1197 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 FunFam Endoribonuclease dicer-like 1 385 548 - -
Stsc241658g00045 1645 Pfam Dicer dimerisation domain 582 668 - -
Stsc241658g00045 1645 MobiDBLite consensus disorder prediction 1 42 - -
Stsc241658g00045 1645 ProSitePatterns Ribonuclease III family signature. 1263 1271 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 555 IPR001650 -
Stsc241658g00045 1645 ProSiteProfiles Ribonuclease III family domain profile. 1041 1186 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 SMART PAZ_2_a_3 882 1040 IPR003100 GO:0005515
Stsc241658g00045 1645 SUPERFAMILY RNase III domain-like 1033 1203 IPR036389 GO:0004525|GO:0006396
Stsc241658g00045 1645 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 206 IPR014001 -
Stsc241658g00045 1645 SMART riboneu5 1242 1395 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 SMART riboneu5 1059 1206 IPR000999 GO:0004525|GO:0006396
Stsc241658g00045 1645 CDD SF2_C_dicer 390 522 - -
Stsc241658g00045 1645 FunFam Endoribonuclease dicer-like 1 1221 1393 - -
Stsc241658g00045 1645 Pfam Helicase conserved C-terminal domain 413 511 IPR001650 -
Stsc241658g00045 1645 Gene3D Ribonuclease III domain 1217 1392 IPR036389 GO:0004525|GO:0006396
Stsc241658g00045 1645 Gene3D Ribonuclease III domain 1040 1197 IPR036389 GO:0004525|GO:0006396
Stsc241658g00045 1645 Coils Coil 292 312 - -
Stsc241658g00045 1645 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 582 672 IPR005034 GO:0016891
Stsc241658g00045 1645 Gene3D - 1557 1636 - -
Stsc241658g00045 1645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 530 IPR027417 -
Stsc241658g00045 1645 MobiDBLite consensus disorder prediction 668 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00045 Stsc-Chr241658 367701 378931 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00045 410 511 Eukaryotic Initiation Factors Gene Family AT1G72730 31.429 2.89e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00045 K11592 - gmx:100806831 2300.78