Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00043 ATGATCCCGAGCAACACCGCACGAAGAGGTCTGCAGCCGTTGACACCAATGTCTTCTGTTCCCTCCTCCCCACATGTTCGATCAGATGCTCCTTTTGCTGGTCTTGTTATATGCGTTACGGGGCTATCTAAAGAAGCAAGGAATCAAGTCATGGAGGCAACAGAAAGATTAGGTGGCCAGTATAGCCCTAATTTGCATCCACAATGTACCCATTTGGTGGTCCAGAGCTCTGCAGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTCGTGGATAGTGTCAGGAAAAATGTGAGGTTGAGTGAATCCCGATACAGTGTGAAGAGTAGTCTGGACAATGACACCCGCTTGGAAGATTTTAAACTGCTTCCTGGGTATACTGGTACTGAAAATTCTTGTCTTCCAGCAAGTCTTCGTGAAACCAAGCATGTTGATAATGTTGAAGAATTTCAAAGATCTTCTGGTAGAAAATCTAATAGAAATGAGGACTTCAGTTTGTCTGGTTACTCCATCTATATTGATCCAGGAATTTCATTTGAATTGAGGAACAAGGTTATTGATACTGCCACAAGAGAAGGTGCTAGTCTTGCGGAACGATGGTTTGTTGGATGCAATGTTAGTCATGTAGTGACCGAAGGGACATTTGTACAAAAATATCTTGGACATTCAAGTAACCTCATCACACCACTGTGGATTCTCAAAACAGCCAAGGAGAAATATGCACAAAGGCTTGTTCACATGTCTGCTGATTTGGCAAAGCAAGTCGGATTGATGCTTGAAGACATTCATAATGGCATTTTAGGGAAGGGCAGTGAAAGTGGATATAGTTACCAGGAGAGGCAACAAATTGTTAATACTGCAAAAATTGGTGTAAGAAGTCGCCGTGGTCGGCAAATGCAGACTTGTCAGACTCCAATACGGCCTATAACTCCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGTCAACTTCAACTGCTTCCATTTACACAGATTCTTTCAGTGTTGATGATCATACAGAAAATCATAGTGCTTCAATATTTTTTGATGCAAAAGGGGATGGCAAGGACTCAGAAGCTGCTTTTTCAAACTCCACTCGTCCGCTAACTGAAAGTGAGAAATCTGAGTTGATATTTAAAAACCATTTTCTCACCATACTCTTCCCAATCGACCGATTCGCCGAGATGGGTCCTTCTTCACAAACATTCTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGAATCATATCCATGCATTTTATCAGGAGAATATGTCAAACCAGGAAATAGAAGCTGCAATTCATACAGACTCAAGACATGCTGATAGACTTAGATCAGTGTACAGCAGTAAAGAAACAGTAGAGCGTGGCTTTGTGATGTTCAAACGCATTGAATTCTTGGGAAGTCGTACTAGTTTTGAAATGTTGAAGCGTGTAAGTGGAGACAACAACTCCAATGTGTATGAGCTATTACTTAGAGCTTAA 1530 0.419 MIPSNTARRGLQPLTPMSSVPSSPHVRSDAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSSAGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESRYSVKSSLDNDTRLEDFKLLPGYTGTENSCLPASLRETKHVDNVEEFQRSSGRKSNRNEDFSLSGYSIYIDPGISFELRNKVIDTATREGASLAERWFVGCNVSHVVTEGTFVQKYLGHSSNLITPLWILKTAKEKYAQRLVHMSADLAKQVGLMLEDIHNGILGKGSESGYSYQERQQIVNTAKIGVRSRRGRQMQTCQTPIRPITPNNLLDSICWSISESTSTASIYTDSFSVDDHTENHSASIFFDAKGDGKDSEAAFSNSTRPLTESEKSELIFKNHFLTILFPIDRFAEMGPSSQTFFSHNGFTCLQVLNHIHAFYQENMSNQEIEAAIHTDSRHADRLRSVYSSKETVERGFVMFKRIEFLGSRTSFEMLKRVSGDNNSNVYELLLRA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00043 509 Gene3D BRCT domain 30 121 IPR036420 -
Stsc241658g00043 509 MobiDBLite consensus disorder prediction 1 26 - -
Stsc241658g00043 509 CDD BRCT_TopBP1_rpt2_like 31 109 - -
Stsc241658g00043 509 ProSiteProfiles BRCT domain profile. 27 119 IPR001357 -
Stsc241658g00043 509 Pfam Family of unknown function (DUF6699) 416 493 IPR046522 -
Stsc241658g00043 509 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 22 509 - -
Stsc241658g00043 509 SMART BRCT_7 29 109 IPR001357 -
Stsc241658g00043 509 SMART BRCT_7 178 251 IPR001357 -
Stsc241658g00043 509 Pfam twin BRCT domain 35 101 IPR001357 -
Stsc241658g00043 509 MobiDBLite consensus disorder prediction 1 25 - -
Stsc241658g00043 509 SUPERFAMILY BRCT domain 30 120 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00043 Stsc-Chr241658 356853 361892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00043 20 123 Core DNA Replication Machinery Family AT1G77320 36.538 2.02e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00043 - - gmx:100815253 818.15