Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00042 ATGGGTGGTGGTAATGGTAGAGTTGATGTTGTGAGTGGCAAGGGATGCTCAAGGCTGTTTTCATCTTCATTCAGAGGTCTGCAGCCGTTGACACCAATGTCTTCTGTTCCCTCCTCCCCACATGTTCGATCAGATGCTCCTTTTGCTGGTCTTGTTATATGCGTTACGGGGCTATCTAAAGAAGCAAGGAATCAAGTCATGGAGGCAACAGAAAGATTAGGTGGCCAGTATAGCCCTAATTTGCATCCACAATGTACCCATTTGGTGGTCCAGAGCTCTGCAGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTCGTGGATAGTGTCAGGAAAAATGTGAGGTTGAGTGAATCCCGATACAGTGTGAAGAGTAGTCTGGACAATGACACCCGCTTGGAAGATTTTAAACTGCTTCCTGGGTATACTGGTACTGAAAATTCTTGTCTTCCAGCAAGTCTTCGTGAAACCAAGCATGTTGATAATGTTGAAGAATTTCAAAGATCTTCTGGTAGAAAATCTAATAGAAATGAGGACTTCAGTTTGTCTGGTTACTCCATCTATATTGATCCAGGAATTTCATTTGAATTGAGGAACAAGGTTATTGATACTGCCACAAGAGAAGGTGCTAGTCTTGCGGAACGATGGTTTGTTGGATGCAATGTTAGTCATGTAGTGACCGAAGGGACATTTGTACAAAAATATCTTGGACATTCAAGTAACCTCATCACACCACTGTGGATTCTCAAAACAGCCAAGGAGAAATATGCACAAAGGCTTGTTCACATGTCTGCTGATTTGGCAAAGCAAGTCGGATTGATGCTTGAAGACATTCATAATGGCATTTTAGGGAAGGGCAGTGAAAGTGGATATAGTTACCAGGAGAGGCAACAAATTGTTAATACTGCAAAAATTGGTGTAAGAAGTCGCCGTGGTCGGCAAATGCAGACTTGTCAGACTCCAATACGGCCTATAACTCCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGTCAACTTCAACTGCTTCCATTTACACAGATTCTTTCAGTGTTGATGATCATACAGAAAATCATAGTGCTTCAATATTTTTTGATGCAAAAGGGGATGGCAAGGACTCAGAAGCTGCTTTTTCAAACTCCACTCGTCCGCTAACTGAAAGTGAGAAATCTGAGTTGATATTTAAAAACCATTTTCTCACCATACTCTTCCCAATCGACCGATTCGCCGAGATGGGTCCTTCTTCACAAACATTCTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGAATCATATCCATGCATTTTATCAGGAGAATATGTCAAACCAGGAAATAGAAGCTGCAATTCATACAGACTCAAGACATGCTGATAGACTTAGATCAGTGTACAGCAGTAAAGAAACAGTAGAGCGTGGCTTTGTGATGTTCAAACGCATTGAATTCTTGGGAAGTCGTACTAGTTTTGAAATGTTGAAGCGTGTAAGTGGAGACAACAACTCCAATGTGTATGAGCTATTACTTAGAGCTTAA 1578 0.4183 MGGGNGRVDVVSGKGCSRLFSSSFRGLQPLTPMSSVPSSPHVRSDAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSSAGRKFEHALKHGAKNGLFVVTLGWFVDSVRKNVRLSESRYSVKSSLDNDTRLEDFKLLPGYTGTENSCLPASLRETKHVDNVEEFQRSSGRKSNRNEDFSLSGYSIYIDPGISFELRNKVIDTATREGASLAERWFVGCNVSHVVTEGTFVQKYLGHSSNLITPLWILKTAKEKYAQRLVHMSADLAKQVGLMLEDIHNGILGKGSESGYSYQERQQIVNTAKIGVRSRRGRQMQTCQTPIRPITPNNLLDSICWSISESTSTASIYTDSFSVDDHTENHSASIFFDAKGDGKDSEAAFSNSTRPLTESEKSELIFKNHFLTILFPIDRFAEMGPSSQTFFSHNGFTCLQVLNHIHAFYQENMSNQEIEAAIHTDSRHADRLRSVYSSKETVERGFVMFKRIEFLGSRTSFEMLKRVSGDNNSNVYELLLRA 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00042 525 Pfam twin BRCT domain 51 117 IPR001357 -
Stsc241658g00042 525 SUPERFAMILY BRCT domain 45 136 IPR036420 -
Stsc241658g00042 525 Gene3D BRCT domain 46 137 IPR036420 -
Stsc241658g00042 525 ProSiteProfiles BRCT domain profile. 43 135 IPR001357 -
Stsc241658g00042 525 CDD BRCT_TopBP1_rpt2_like 47 125 - -
Stsc241658g00042 525 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 525 - -
Stsc241658g00042 525 SMART BRCT_7 194 267 IPR001357 -
Stsc241658g00042 525 SMART BRCT_7 45 125 IPR001357 -
Stsc241658g00042 525 Pfam Family of unknown function (DUF6699) 432 509 IPR046522 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00042 Stsc-Chr241658 356853 361892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00042 36 139 Core DNA Replication Machinery Family AT1G77320 36.538 2.03e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00042 - - gmx:100815253 853.203