Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00041 ATGGCTGACGTCATGATCATGAAAGACATTGAGGCCACCGCCTTCCGTCTCGGACTCGACCTTTCCTCCATTGATCTTGACTCCATACACCTCCCCCCTTCCGACGATTGCGGCATTCCCAGTGATGATGAGGATGTTTACGAAGAGGACAATCCGGAGTTTGATTCTGGATTCGGCAACGTCATTGTTGTGGATAACGTTCCCATTGTTCCCATGGAGAAATTCGAGAAGCTGGAAACCGTTATTCGCAAAATTTACAGCCAGGTTGGTGATATAAAAGAAAACGGTCTCTGGATGCCTCTTTCTTCCGACTCTACCAAGACTTTGGGTTATTGCTTCATTGAGTTCAATACCCCTCAGGAAGCAGAGCTTGCTAAAAAGGAGACTCAAGGATATAGATTGGACCGTTCCCACATATTTTCGGTCACCATGTTTGATGAATTTGATAAGTTTATGAAAGTTCCAGATCAATGGGCTCCTTCTGAGTCTAAGCCATATGCTCCAGGGGAAAATCTTCAGAATTGGCTCACCGATGCAAAAGCCCGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACTGAGGTTTTGTGGAATGATGCCAGGCATTTGAAGCCTGATCCAGTTTACAAGCGTTCATTTTGGACAGAGAGTTTTGTGCAATGGTCCCCACTGGGCACATACTTGGCAACAGTTCACAGGCAGGGTGCACAAGTTTGGGGAGGTGCTACAGCATTCGACCGTCTTATGCGTTATGCTCATCCTCAGGTGAAGCTAATTGATTTTTCACCTGGTGAGAAGTACTTAATAACTTATAGCAGCCATGAACCCAGCAATCCTCGAGATATTAATAGGGTCGTGGTAAATATATTCAATGTGAGGACCGGGAAAGTGATGAGGGATTTTAAAGGAATTGCTGATGATTTTACTGTTGGAGGTGCTGGTGGTGTCACTGGGGTGTCATGGCCTGTTTTCAAATGGAGTGGTGGAACAGATGACAAGTATTTTGCAAGGATGGGGAAAAATGTACTTTCGGTATATGAGACAGATACATTTTCTCTCGTTGACAAGAAGTCCTTAAAGGTTGAAAATATAATGGACTTCAGCTGGTCTCCAACTGATCCAATTATTGCACTCTATGTTCCAGAGATGGGGGGTGGTAACCAACCTGCTAGGGTAAGTCTGATTCAAATCCCAGGCAAAGAGGAACTTAGGCAGAAGAACCTTTTTAGTGTCAGTGACTGCAAGATGTATTGGCAAAGCAATGGAGATTACCTTGCTGTTAATGTAGACCGTTATACTAAAACTAAAAAAAGCACATACACAGGATTTGAGCTCTTCCGTATAAAGGAACGTGACATACCCATTGAGGTTTTGGAGCTTGAAAATAAGAATGACAAGATCATTGCGTTTGCTTGGGAGCCAAAGGGTCACAGATTTGCAATTATTCATGGTGATAACCCTAAGCCTGATGTAAGCATTTACTCTATGCGGACCGCTCAGAACACTGGCCGGGTGTCAAAGCTCACTACTTTGAAAGGCAAGCAGGCGAATGCTCTGTATTGGTCGCCAACAGGTCGCTTCATCGTATTAGCTGGGCTGAAAGGCTTCAATGGGCAGCTGGAATTTTACAATGTTGATGAACTTGAAACCATGGCTACAGCTGAACATTTTATGGCTACGGATGTTGAATGGGATCCAACTGGAAGATATGTTGCAACTTCTGTAACTTCAGTTCATGAAATGGAAAATGGTTTCAATATATGGTCTTTCAGTGGCAAGCATCTCTATCGGGTACTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCAAGGCCACCATCTTTCTTGAGTGCTGAGAAAGAGGAGGAGATTGCAAAGAGCTTGAAGAAGTATAGCAAGAAATATGAAGCCGAAGACCAAGACGTATCGGCGATGCTAAGTGAGCAGGAGAGGGAGAGGCGTAGAAAGTTGAAAGAAGAATGGGATAAGTGGGTGAGTGAATGGAAGGGGTTGCATGAAGAAGAGAAGTTGCAGAGGCAAAATCTTAGAGATGGAGAAGCTAGTGATGAAGAAGAGGAATACGAGGCAAAGGACATACAAGTTGAGGAAGTTATCAATGTAACTGAAGAGGTAGAAGTAGAACATGCTCAAGAGCGAACCAAAGCTTGA 2169 0.4398 MADVMIMKDIEATAFRLGLDLSSIDLDSIHLPPSDDCGIPSDDEDVYEEDNPEFDSGFGNVIVVDNVPIVPMEKFEKLETVIRKIYSQVGDIKENGLWMPLSSDSTKTLGYCFIEFNTPQEAELAKKETQGYRLDRSHIFSVTMFDEFDKFMKVPDQWAPSESKPYAPGENLQNWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRSFWTESFVQWSPLGTYLATVHRQGAQVWGGATAFDRLMRYAHPQVKLIDFSPGEKYLITYSSHEPSNPRDINRVVVNIFNVRTGKVMRDFKGIADDFTVGGAGGVTGVSWPVFKWSGGTDDKYFARMGKNVLSVYETDTFSLVDKKSLKVENIMDFSWSPTDPIIALYVPEMGGGNQPARVSLIQIPGKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDNPKPDVSIYSMRTAQNTGRVSKLTTLKGKQANALYWSPTGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATSVTSVHEMENGFNIWSFSGKHLYRVLKDHFFQFLWRPRPPSFLSAEKEEEIAKSLKKYSKKYEAEDQDVSAMLSEQERERRRKLKEEWDKWVSEWKGLHEEEKLQRQNLRDGEASDEEEEYEAKDIQVEEVINVTEEVEVEHAQERTKA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00041 722 Gene3D - 407 635 IPR015943 GO:0005515
Stsc241658g00041 722 Gene3D - 178 382 IPR015943 GO:0005515
Stsc241658g00041 722 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Stsc241658g00041 722 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Stsc241658g00041 722 SUPERFAMILY DPP6 N-terminal domain-like 218 599 - -
Stsc241658g00041 722 CDD RRM_eIF3B 59 143 IPR034363 -
Stsc241658g00041 722 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 28 709 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc241658g00041 722 Gene3D - 59 143 IPR012677 -
Stsc241658g00041 722 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Stsc241658g00041 722 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 136 IPR000504 GO:0003723
Stsc241658g00041 722 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Stsc241658g00041 722 Coils Coil 618 638 - -
Stsc241658g00041 722 MobiDBLite consensus disorder prediction 676 698 - -
Stsc241658g00041 722 FunFam Eukaryotic translation initiation factor 3 subunit B 411 626 - -
Stsc241658g00041 722 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 60 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Stsc241658g00041 722 SUPERFAMILY RNA-binding domain, RBD 51 139 IPR035979 GO:0003676
Stsc241658g00041 722 PIRSF Transl_init_eIF3b 6 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00041 Stsc-Chr241658 345037 348968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00041 5 711 Eukaryotic Initiation Factors Gene Family AT5G27640 73.729 0.0 1148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00041 K03253 - gmx:100817394 1234.55