Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00035 ATGGATATGGTGATGAAGAATTCAAAGCATCTTGCTAATAACATCTCTGCTGCGGCTGATGAAAAAGGTGCTGATGCAGCTCATCATGATGCACCTAATAATAATAATAATGACACTTCATCATCATCATCATCGAAGAAGGTGTACAAAGGAGTGAGGAAGAGAAAGTGGGGGAAATGGGTATCAGAAATTAGGCTTCCCAATAGCCGCGAACGCATTTGGCTTGGCTCTTACGATTCACCTGAAAAAGCTGCGCGTGCTTTCGATGCTGCCCTTTATTGTCTACGAGGTTGTCGCGCCAAATTCAATTTCCCAGACACGCCTTTCAACTTGCAGAACACCAGCGCTGTTCTTCACCGTTCGCTTACTCATCAACAAATTCAAGAGATTGCTGCTACCTTTGCAAATCACCATCACCAACAACCAAATAATAATAATGAATCCATCAATAAAGCTGATGATGATGATGCTGTTGTTGTTGTATCTGAAGATCAAGTAGTAGTGGACAAGAACAACGAGGACATGATGATGATGAATATTGATGATTGGACATTCTTGAAGGATTTGGGTGGTACTTCTTCTTCTTGTGCTGATTATGGCGGTAGTAGTGCTCTCTATTCTGATGAGTTGGACAAAATTGATAATCATCATCACTACTCTGGTGGTGGTGAATTGTTATACTCATCAGTACCAACTTTTCAGGATAATGTTGTGGATGATGATGACGATGACCCTTTTTATAATCCATCATTATTCCTTTGGAATTGGAGCTTTTAA 777 0.4041 MDMVMKNSKHLANNISAAADEKGADAAHHDAPNNNNNDTSSSSSSKKVYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGCRAKFNFPDTPFNLQNTSAVLHRSLTHQQIQEIAATFANHHHQQPNNNNESINKADDDDAVVVVSEDQVVVDKNNEDMMMMNIDDWTFLKDLGGTSSSCADYGGSSALYSDELDKIDNHHHYSGGGELLYSSVPTFQDNVVDDDDDDPFYNPSLFLWNWSF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00035 258 FunFam Ethylene-responsive transcription factor 2 47 106 - -
Stsc241658g00035 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 169 - -
Stsc241658g00035 258 MobiDBLite consensus disorder prediction 30 47 - -
Stsc241658g00035 258 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Stsc241658g00035 258 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Stsc241658g00035 258 MobiDBLite consensus disorder prediction 21 50 - -
Stsc241658g00035 258 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Stsc241658g00035 258 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Stsc241658g00035 258 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Stsc241658g00035 258 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Stsc241658g00035 258 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Stsc241658g00035 258 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00035 Stsc-Chr241658 308398 309417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00035 41 136 AP2-EREBP Transcription Factor Family AT1G19210 71.875 1.74e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241658g00035 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00035 - - aip:107622034 260.381