Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00015 ATGGTGTGTGAGAAGGAGAGTGAGTGCATTGAGGACATGGAAGTTGAAATCCTTCCTTCAATGTGGCCCGAAGATATTGGAAGTGAAGTTGGAAAGCAATTCAATATAGAAAAGCCTGGAAGGGACCAAGATATGTTGGAGGATGTTACAATCATAGAGGAGCCAACTATAGCCGATTTCAAGCGCCTCATGGAGCTTACCAATTTCACTGAGAAAGGGTCTTCTCAGTTGGCATATCTCATGAAGCATTGGGAGTACAAGCAGGCAAATGCGTCGCGCCTTCTAAGGGAGGAACTCGATAGCCTTAGCAAGCAAAGGCAGGATGTTGAGCTAAGGAAAATGGAGATACTTGAGGAGCATCGGTTCGAGGAAGAAAGATATGGAGGGGACAAACGGCCGGTGTCTATATTGGAAGATGTTTATGATATATGGCAGGACGTGCCGCGGAGGAAGAACAAGGTTGTGGTTCAGAACAAGAGAATTGAAATAGATGCTGCTGAGTATGATACTGTTAAGTATTGGAAACAAAGGGCCTTGCATTCGGAGAAATTGCTTGAAGCAAGCATCCAGAGAGAGCAGATACTCCAAGAGAAGTTGCAAGAAAGGATAAAGAACATTGAGAGACAATCCTCACCTGTAGAAGAACTCTCCCAGATTCTGAAAAGAGCAGATAATTTCTTACATTTCATTCTTCAGAATGCACCTGTTGTTATTGGCCATCAGGACAAGGAGTTGCGGTATCGGTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGATATAATAGGAAAAACAGATATTGAAATATTCACAGGATCTGGTGTGAAAGAATCTCAAGAGTTCAAGAGAGAAGTATTGGAGAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTCTTGATATATGTAGAACCTGTCTTTAGCAAAGCAGGGGAGACAATTGGAATAAACTATATGGGAATGGATGTAACAGATCAGGTGAGGAAAAGAGAAAGGATGGCCAAGATTCGCGAAGAGATTGCGGTTCAGAAAGCAAAGGAAACAGAACTAAACAAAACCATTCACATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCCACAATGTCACATGAGATTAGGTCTCCATTATCTGGGGTTGAATCAGGAGTTATGAAGTTGGAGGCCACTAAATTCCGGCCACGAGAGGTACTAAAGCATGTACTCCAGACGGCTGCAGCGTCGTTGCAGAAAATACTAACCTTAGAAGGACATGTGTCGGATGATGTACCAATTGAGGTCGTTGGTGATGTTTTAAGGATTCGGCAAATCCTTACAAACTTGATCAGCAATGCCATCAAATTTACACATGAAGGGAAAGTTGGTATAAACCTATATGTTGTTTCTGGAACTCAAGCAAATGAAGATAGATGCCTCTCAACACCTCAAAGTAGCAGTGACCGAAATCTTCTTGATGCTCAAAGACATGATCACCCTCCAAGCCAAAACCATGCATTTCATGGTGAGTGCATATCACCAGTTAAAAGTGAATGCTCAGCAAATGGAGACACTGAAGAGCATCATCATTCGACAGAGACAACGGTGTGGATTCGCTGTGATGTATATGACACAGGCATTGGAATACCAGAAACTGCAATACCTACTTTATTTAAAAGGTACATGCAAGTTGGCGCAGATCATACTCGAAAGTATGGTGGCACAGGACTAGGACTAGCAATATGCAAGCAACTGGTTGAGTTGATGGGGGGTGATCTGACTGTGTCTAGCAAAGAACACCATGGCTCTACCTTCACATTCATACTTCCCTACAAGGTTTCAATCATTGAAGAAAATTCTGATGACACAGATGAGCTCTCTGATATGGAGAATGATGAGGGTACTTGTGATGATACAACAGAAAGTTTCTTCCAATTCCAACCGCGAACTTTAGGCTCTCTTTTCTCTTCTAATGGTTCTAGCAGGACACAGAAGTTATTAACACATAAGATTGGCTATACAAGCTCAAATACTTCAGAGTGTTCATTCTCATTCCCATCTCATGATATCATATCAAAAGGGACATGTTCTGTTCAGGATTCATCTTTAGTAGTTGATACTCCAGAGATATCTGAATCATCAGCAAGTTCATCCGGTCAGAGCCGAGAAACAAACATCGAAAATGTAGTTAGCAGAGATAAATATTGTCAAGATAAGGGTATAGCAGATTCTTCTAAACATATGGTGGCAGCTTTAGAAATGGATATAGCAACAAAGTCAAGTGAACTTCAACAAAAATTTAAGGTTCAAGGGAATGTTACTAGCATCTTTGCATCAGAATTAACCAAATCCACATCAAAGCCTAAGATCCTTCTAGTTGAAGATAGCAAGATTAATATCATGGTGACACAATCCATGATGAAGCAGTTAGGCCATAGCATAGATGTCGTGAATAATGGAGCCGAAGCAGTTCGTGCTGTTCAACAATGCTCTTATGACCTGGTTCTGATGGATGTTTGCATGCCAATAATGAATGGTCTTCAGGCGACGAAATTGATTCGGTCTTTTGAGGAATCAGGAAAGTGGGATGCTGCAAGAAAAGCTTTAATGGAGCTAAATCTAGCAGATCTAGATTATGAATGTTCTGGACCCTCTAAAAAGCGGATTCCAATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAATGTTTTGCAAATGGTATGGACTCATTTGTATCAAAACCTGTAACTTTTCAAAAACTGAAAGAGTGTCTTGAACAATATCTAAGTTGA 2811 0.408 MVCEKESECIEDMEVEILPSMWPEDIGSEVGKQFNIEKPGRDQDMLEDVTIIEEPTIADFKRLMELTNFTEKGSSQLAYLMKHWEYKQANASRLLREELDSLSKQRQDVELRKMEILEEHRFEEERYGGDKRPVSILEDVYDIWQDVPRRKNKVVVQNKRIEIDAAEYDTVKYWKQRALHSEKLLEASIQREQILQEKLQERIKNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDIEIFTGSGVKESQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVESGVMKLEATKFRPREVLKHVLQTAAASLQKILTLEGHVSDDVPIEVVGDVLRIRQILTNLISNAIKFTHEGKVGINLYVVSGTQANEDRCLSTPQSSSDRNLLDAQRHDHPPSQNHAFHGECISPVKSECSANGDTEEHHHSTETTVWIRCDVYDTGIGIPETAIPTLFKRYMQVGADHTRKYGGTGLGLAICKQLVELMGGDLTVSSKEHHGSTFTFILPYKVSIIEENSDDTDELSDMENDEGTCDDTTESFFQFQPRTLGSLFSSNGSSRTQKLLTHKIGYTSSNTSECSFSFPSHDIISKGTCSVQDSSLVVDTPEISESSASSSGQSRETNIENVVSRDKYCQDKGIADSSKHMVAALEMDIATKSSELQQKFKVQGNVTSIFASELTKSTSKPKILLVEDSKINIMVTQSMMKQLGHSIDVVNNGAEAVRAVQQCSYDLVLMDVCMPIMNGLQATKLIRSFEESGKWDAARKALMELNLADLDYECSGPSKKRIPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECLEQYLS 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00015 936 Pfam Response regulator receiver domain 793 860 IPR001789 GO:0000160
Stsc241658g00015 936 Coils Coil 92 119 - -
Stsc241658g00015 936 FunFam Histidine kinase 5 214 349 - -
Stsc241658g00015 936 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 388 614 IPR036890 -
Stsc241658g00015 936 CDD REC_hyHK_CKI1_RcsC-like 793 931 - -
Stsc241658g00015 936 ProSiteProfiles Histidine kinase domain profile. 366 616 IPR005467 -
Stsc241658g00015 936 SUPERFAMILY CheY-like 789 936 IPR011006 -
Stsc241658g00015 936 PRINTS Bacterial sensor protein C-terminal signature 541 555 IPR004358 GO:0016310|GO:0016772
Stsc241658g00015 936 PRINTS Bacterial sensor protein C-terminal signature 600 613 IPR004358 GO:0016310|GO:0016772
Stsc241658g00015 936 PRINTS Bacterial sensor protein C-terminal signature 576 594 IPR004358 GO:0016310|GO:0016772
Stsc241658g00015 936 SMART HKATPase_4 440 616 IPR003594 -
Stsc241658g00015 936 Coils Coil 189 209 - -
Stsc241658g00015 936 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 62 935 - -
Stsc241658g00015 936 MobiDBLite consensus disorder prediction 480 506 - -
Stsc241658g00015 936 CDD HisKA 371 426 IPR003661 GO:0000155|GO:0007165
Stsc241658g00015 936 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 440 614 IPR003594 -
Stsc241658g00015 936 FunFam Probable histidine kinase 1 506 619 - -
Stsc241658g00015 936 SMART REC_2 791 931 IPR001789 GO:0000160
Stsc241658g00015 936 CDD HATPase_EvgS-ArcB-TorS-like 445 613 - -
Stsc241658g00015 936 Gene3D - 784 936 - -
Stsc241658g00015 936 Gene3D PAS domain 214 349 - -
Stsc241658g00015 936 ProSiteProfiles Response regulatory domain profile. 792 935 IPR001789 GO:0000160
Stsc241658g00015 936 FunFam Histidine kinase 5 785 936 - -
Stsc241658g00015 936 Gene3D - 393 619 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00015 Stsc-Chr241658 133065 137258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00015 1 935 Histidine Kinase Gene Family AT5G10720 54.205 0.0 1004
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc241658g00015 HATPase_c 4.1e-28 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00015 - - gmx:100819520 1417.14