Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00014 ATGGTGATGAAGAAGAATAACGTTACAAGATTCTTGGTTGTGTTGTTGGTGGGTGTTGTGGGTGTAGCTGCAGAAGGAAATAAGAAGAATGGTACAAGAGAAGTGAAGGTGGGGGCAGTGCTTGATGTTGGGGTTGGAATGGTAGGGAAGATGGGTTTGAACAGCATAAGAATGTGTATCAATGATTTCTATGTCTCTAATCCTCATTACAAAACCAGGCTCCAACTTATTCTTAGAGATTCACAAAGAAACGTTCTTACTGCTGCTGCTCAAGCTTTGGATCTCATAAAGAATGAACAAGTGGAAGCTGTGATAGGACCAGTTACATCAATGGAAGCCATGTTTGTGATCAACCTTGGAGACAAAGCTCACGTCCCCATTCTCACCTTCTCAGCAACAAGCCCTTCTCTTTCATCACTCCACACACCATATTTCTTCCAAATTGCACAGAAGGACACAACTCAGGTTGAAGCCATAACCGCCATTATCCAAGCCTTTGGATGGAAAGAAGTGGTTCCAATTTATGTGGACAACACTTTTGGCCAAGGACTCATTCCATCTCTTACCAATTCACTTCAGAAAGCTTACATCCGCGTTCCTTATCTCACTCCCATTGATTTCTCAGCCTCAGATGATGCCATTGAGAAAGAGCTGTACAAGCTCATGACTATGCAAACAAGAGTGTTTGTTGTTCACATGACACCCCCTCTTGGCACTCGCCTCTTCTCCATTGCTAAGACCATTGGCATGATGGATCATGGTTATGTTTGGATTCTCACTGATGGAATGGCCAATTTCTTCAACTCGTTGGACTCTTCAATTATGGAATCCATGGAAGGTGTCTTGGGTGTTAGGCCTTATATTCCAAGAACAAGACAGCTTCTTGATTTTAGAGCAAGATGGAAACAACACTTCCTGAGAGACAATCCAACACTTGTTGATATCAATCTGAATGCTCTTGGAATATGGGCTTATGATGCTACCACTGCCTTGGCCATGGCCGTTGAGAAACTTGACACCACCCTTTCTGGCTTCACTCATGTCAGCAACAACTCAAGCCATGTGACTGATCTTGAAAGCTTTGGTGTTTCGCGAAACGGTGAGAAGCTGAGGGAAGCTTTGTCAAATGTTAGATTCAAAGGTGTGGGTGGTGACTTCAAATTAGTTGGCAATGGGGAGTTACAAGCATCGCCATTTGAGATACTTAATGTCATTGACGCTTTGCCTTATGCTCTTCCATTTGATTTCATTCCATTTGAAAAATCCAATGGTGAGATGGCAGGAACCTATGATGATTTGATCTCCCAAGTTTATTATGGGAACTTTGATGCTGTGGTGGGGGATACAACCATTACAGCAAACAGGTCGAATTTTGTTGACTTCACATTGCCATACACAGAATCTGGTGTGACCATGGTTGTTCCAATAAGAGACAGTAGAAAGAAGAATGCATGGGCCTTCTTGAAGCCATTGACATGGGACCTTTGGGTTACAACATTTTGTACATTTGTATTCATAGGATTTGTTGTTTGGCTACTTGAACACCGAATCAACAGCCATTTCAGAGGGCCTCCTTCTTATCAAATTGGCACTAGCTTGTGGTTTTCCTTCTCAACCATGGTGTTTTCTCATCAGGAGAAAGTGGAGAGTAACTGTGGAAGATTTGTGGTGATAGTATGGGTTTTCTTTGTTCAAATTCTGGTTCAAAGCTACACTGCAAGCCTTACTTCTCTCTTAACAGTTGAACAACTTCACCCGGTTATCACCGATGTGCATCAACTCCTAAAGAATCGGCTGAATGTTGGTTATTTGGAAGGTTCTTTTGTTCATGAAATCTTGAAGGACTTGGGGTTCCAAGAATACCAGCTCAAGATTTACAAATCTGCAGAAGAATGCAATGATCTCTTCACAAAAGGAACTGCAAATGGTGGTATCGATGCTGCATTCGATGAAGTCCCATATGTGACTCGCCTTCTTCAAATTTACTGCTCTAAGTATACCATGATTGAGCCAAAATTTAAAACCGGTGGCTTTGGATTTGTATTTCCAAAAGGGTCACCTCTTGTGTCAGACATATCAAGGGCAATTTTGAATGTGACTCAAGGAGATAAAATGAAGACAATTGAGAATGCATGGTTGAATGGAAGCAGTTGTCCAGAATCTAGTGCTCAAGTTTCTTCTGCAAGTTTAGGACTTGAAAGCTTCTGGGGTCTATTTCTTGTTATAGGTGTTTCTTGTGCATTAGCACTCATGTTCTTCTTAGCAACATTCCTATATCAGCATAGGCATGTTTTGTCAAGCTATCATCCCAACACTTCAATATGGACAAGAATTGTAACCTTGCTAAGTATCTTCAATGAAAAAGACATGAGTTCTCACACTTTCAAGAAAAGTAAACTAAAGCAAGATGCAAGTGTAGCTAGTAGTCCTGCTCATCATCATCATGGAATAGGTTCAGCTGATGCATCACCAAATACACATTGCCCTCCAAGTCCTTACAGTTACACAGAGTCAAATTTTTCATTCTATGGAGACCAAGGAATGTTTAGTCCGGATCGACATGGTTATGGAACTCATCAAGGTCATGACACTCAAGACAGAGAAACAAGGGTGGTGCATGATGATACTCGAGAAGAAGCGGCCACTACAAACAGCAACACGACTAACTCCGAAGCCACTTAG 2682 0.4172 MVMKKNNVTRFLVVLLVGVVGVAAEGNKKNGTREVKVGAVLDVGVGMVGKMGLNSIRMCINDFYVSNPHYKTRLQLILRDSQRNVLTAAAQALDLIKNEQVEAVIGPVTSMEAMFVINLGDKAHVPILTFSATSPSLSSLHTPYFFQIAQKDTTQVEAITAIIQAFGWKEVVPIYVDNTFGQGLIPSLTNSLQKAYIRVPYLTPIDFSASDDAIEKELYKLMTMQTRVFVVHMTPPLGTRLFSIAKTIGMMDHGYVWILTDGMANFFNSLDSSIMESMEGVLGVRPYIPRTRQLLDFRARWKQHFLRDNPTLVDINLNALGIWAYDATTALAMAVEKLDTTLSGFTHVSNNSSHVTDLESFGVSRNGEKLREALSNVRFKGVGGDFKLVGNGELQASPFEILNVIDALPYALPFDFIPFEKSNGEMAGTYDDLISQVYYGNFDAVVGDTTITANRSNFVDFTLPYTESGVTMVVPIRDSRKKNAWAFLKPLTWDLWVTTFCTFVFIGFVVWLLEHRINSHFRGPPSYQIGTSLWFSFSTMVFSHQEKVESNCGRFVVIVWVFFVQILVQSYTASLTSLLTVEQLHPVITDVHQLLKNRLNVGYLEGSFVHEILKDLGFQEYQLKIYKSAEECNDLFTKGTANGGIDAAFDEVPYVTRLLQIYCSKYTMIEPKFKTGGFGFVFPKGSPLVSDISRAILNVTQGDKMKTIENAWLNGSSCPESSAQVSSASLGLESFWGLFLVIGVSCALALMFFLATFLYQHRHVLSSYHPNTSIWTRIVTLLSIFNEKDMSSHTFKKSKLKQDASVASSPAHHHHGIGSADASPNTHCPPSPYSYTESNFSFYGDQGMFSPDRHGYGTHQGHDTQDRETRVVHDDTREEAATTNSNTTNSEAT 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00014 893 FunFam Glutamate receptor 484 614 - -
Stsc241658g00014 893 Pfam Receptor family ligand binding region 55 404 IPR001828 -
Stsc241658g00014 893 CDD PBP1_GABAb_receptor_plant 36 406 IPR044440 -
Stsc241658g00014 893 Pfam Bacterial extracellular solute-binding proteins, family 3 429 714 IPR001638 -
Stsc241658g00014 893 FunFam Glutamate receptor 151 306 - -
Stsc241658g00014 893 Gene3D - 404 484 - -
Stsc241658g00014 893 SUPERFAMILY Periplasmic binding protein-like I 34 406 IPR028082 -
Stsc241658g00014 893 Pfam Ligand-gated ion channel 715 745 IPR001320 GO:0015276|GO:0016020
Stsc241658g00014 893 SMART GluR_14 378 715 IPR001320 GO:0015276|GO:0016020
Stsc241658g00014 893 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 800 IPR015683 -
Stsc241658g00014 893 MobiDBLite consensus disorder prediction 851 893 - -
Stsc241658g00014 893 PIRSF IGluLR_plant 4 407 IPR017103 -
Stsc241658g00014 893 PIRSF IGluLR_plant 404 839 IPR017103 -
Stsc241658g00014 893 FunFam Glutamate receptor 2.7 621 720 - -
Stsc241658g00014 893 Gene3D - 485 622 - -
Stsc241658g00014 893 CDD GluR_Plant 399 713 - -
Stsc241658g00014 893 MobiDBLite consensus disorder prediction 802 830 - -
Stsc241658g00014 893 Gene3D - 151 291 - -
Stsc241658g00014 893 Gene3D - 49 396 - -
Stsc241658g00014 893 SUPERFAMILY Periplasmic binding protein-like II 404 715 - -
Stsc241658g00014 893 MobiDBLite consensus disorder prediction 856 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00014 Stsc-Chr241658 127952 132700 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00014 404 837 Ion Channels AT2G29120 52.414 2.51e-139 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00014 K05387 - qsa:O6P43_019170 613.994