Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00013 ATGTCCCTTTCCGATTTCTATGATGCTCATCCTCATTACAACACTAGGCTTCTCCTTAATGTCAGAGACTCCCAAAATGATGTGGTTACCGCTGCTTCTGCAGCTGTAGAGTTGATGAAAAAGGAGAAGGTGGAAGCAATAATGGGACCAGTTACATCAATGCAAGCAAGCTTTGTTGTGAATCTTGGAGACAAAGCTCATGTTCCCATAATATCCTTCACTGCAACAAGCCCTTCTCTAACTTCTCTCGGCAGTTCCTACTTCTTCCGAATCGCGCAAAACGATTCCTCTCAAGTTGACGCCATTACAGACATCATCCAATCCTTTTCCTGGAGACAAGCAGTTCCTATCTACATCGACAACGACTATGGCCGCGCCATTATTCCCTTCTTAACCAATTCCCTTCAACAAGCTAACATTCGAGTCCCCTACTTGGCTGTTATATCTCCCTCTGCCACCGTTGATCAGATTGAAGAACAGCTTTACAAGCTTATGACCATGCAAACCAGGGTTTTCGTTGTTCATATGTTAAATAATCCTGGCTCTACTCTCTTCGCCATTGCTGATAGGATTGGAATGATGAGTCAAGGCTATGTTTGGATTGTTACCAATGGTATGGCCAACACTTTAGCCTCTCTTGACTCCTCTGAAATGGAAGCAATGCAAGGCGTTATTGGAGTGAAAACGTATGTTCCTAAAAGCAAGAGGATGGTTGAGTTTCAAGCACGGTGGAAGAGAAGGTTTTTGCAGGAGAATCCAACCATGGTTGATGCCAACATCAATGTGTTTGGATTGTGGGCTTATGATGCCACAACCGCGCTCGCAAGCGCGGTTGAGAGGGCTAATAATAATAATACAAAATTAGGATTTGAAAATACTACTACAAATACTTCCAGCAATTTCAGTGACATGGACAATCTAGGAGTATCTCATAGCGGTGAAGAATTGCGAGACGCTTTATCAGACACCAGATTCAGCGGCCTCGCAGGCGAATTTAGCCTTATCAACGGGCAGTTGGATGCTACAACTTTTCAGATAATTAATGTAAATGGTAATGGAGAAAAGGTGATAGGATATTGGACACCACAGAAGGGATTAACAAGGAATCTTAGTAGTAGTAGTAGTAGTGGTGGTGGTGGTTTGAATAATAATAATAATAATCTAGGGGCAATGATATGGCCAGGGGATAGTTATTCAGTTCCAAAGGGATGGGAGATACCAACAAATGGGAAGAAATTGAGGATAGGAGTTCCGGTTTCATCAAGGCCTCAATTTGTGAATGTTGAACTTGATAGTGAAACTAACACAACAAAGGTCACTGGTTTCAGCATCGATGTGTTTGAGGCAGTGGTGCAAGATTTGCCCTATGCTCTGCCATACCAACTCATTCCATTTGCAAAATCCAATGGAGAGATGGCCGGCACCTATAATGATTTGATCATGCAGGTGTTTGATGCTGTGGTGGGAGACACAACCATTATAGCAAACAGGTCAAAGTACGTTGACTTCACACTGCCGTATACAGAATCAGGGGTATCAATGGTGGTGCCAGTGAAAGACAAGAGCAAGAAGGGTGCATGGGTATTCCTGAAGCCTCTCACATGGGATCTGTGGATGACTACTGGTTGTTCCTTCGTGTTCTTTGGATTCGTGGTGTGGGTTCTTGAGCACCGCATCAACAAAGATTTTCGTGGCCCTCCTTCTCACCAGATCGGCACCAGTTTGTGGTTTTCCTTCTCCACCATGGTCTTTGCTCATAGGGAGAAAGTAGTGAGCAACACTGCAAGGTTTGTTGTGATAATATGGGTATTTGTGGTGCTGATCTTGACTCAGAGTTATACCGCAAATTTGTCATCACTACTAACGGTGGAGCAACTTCGACCAACGGTGACGAATGTGAATGATCTAATAAAGTATGGGACACGTGTCGGGTACCATAGAGGTTCTTTTATTCGTGGGATATTGCTGAACCTAGGTTTCAAGGATTTTCAGCTCATAACTTATAATTCCACTGCCCAATGTGATGATCTTCTAAGCAGAGGTAGTCAAAATGGTGGAATTGCTGCTGCCTTTGATGAAATCCCTTACATTAGGATCCTTCTTGGAACATATTGCTCTAAGTATGCCATGGTCGACCCCACATTTAAAACCGATGGCTTTGGCTTTGTGTTCCCAAGAAATTCTCCAATGGTGGCTGATGTTTCCAGGGCAATTCTGAAAGTAACGGAAGATCCAAGAATGAAAGAAATAGAAAATGCATGGTTTCAGAACAGAAGTAGTTGCCAAGAAGAAGATGCATCAGTCTCTTCTTCTAATAGTCTTGGCCTTGATAGCTTCTGGGGCCTCTTCCTCATTGCTGCTTTGCCTTCCATTTCAGCACTCCTCATCTTTTCAGCTACATTCTTGTATGATCATAGACACCAATGGTGGTTCATCAACAATAATCATGATGATAATCATCTATGGAAGACTCGAATCCGTGTCTTGCTGAGAATCTTTGACCAGAAAGACCCTAGGTCTCACAGATTCAAGAGAGGTAGTAATAATGATTCAATTAAGGAAGAAGAAGATAGAGAGAATAATGATCAAAGTAGCAGCACAATTATTGGTCCTCATTATCATCATCATGAACATGATCATAGCTTAGATGCTGCATCAAGCTACACAGAATCGAGTTTCTCATTTCAAGGATCACCATGTGAAGACAATAATAATAATGTAGAGTTGAATAATTTGAATAGTAGTCAACCATCTCAACAAGAGAACTGA 2769 0.4233 MSLSDFYDAHPHYNTRLLLNVRDSQNDVVTAASAAVELMKKEKVEAIMGPVTSMQASFVVNLGDKAHVPIISFTATSPSLTSLGSSYFFRIAQNDSSQVDAITDIIQSFSWRQAVPIYIDNDYGRAIIPFLTNSLQQANIRVPYLAVISPSATVDQIEEQLYKLMTMQTRVFVVHMLNNPGSTLFAIADRIGMMSQGYVWIVTNGMANTLASLDSSEMEAMQGVIGVKTYVPKSKRMVEFQARWKRRFLQENPTMVDANINVFGLWAYDATTALASAVERANNNNTKLGFENTTTNTSSNFSDMDNLGVSHSGEELRDALSDTRFSGLAGEFSLINGQLDATTFQIINVNGNGEKVIGYWTPQKGLTRNLSSSSSSGGGGLNNNNNNLGAMIWPGDSYSVPKGWEIPTNGKKLRIGVPVSSRPQFVNVELDSETNTTKVTGFSIDVFEAVVQDLPYALPYQLIPFAKSNGEMAGTYNDLIMQVFDAVVGDTTIIANRSKYVDFTLPYTESGVSMVVPVKDKSKKGAWVFLKPLTWDLWMTTGCSFVFFGFVVWVLEHRINKDFRGPPSHQIGTSLWFSFSTMVFAHREKVVSNTARFVVIIWVFVVLILTQSYTANLSSLLTVEQLRPTVTNVNDLIKYGTRVGYHRGSFIRGILLNLGFKDFQLITYNSTAQCDDLLSRGSQNGGIAAAFDEIPYIRILLGTYCSKYAMVDPTFKTDGFGFVFPRNSPMVADVSRAILKVTEDPRMKEIENAWFQNRSSCQEEDASVSSSNSLGLDSFWGLFLIAALPSISALLIFSATFLYDHRHQWWFINNNHDDNHLWKTRIRVLLRIFDQKDPRSHRFKRGSNNDSIKEEEDRENNDQSSSTIIGPHYHHHEHDHSLDAASSYTESSFSFQGSPCEDNNNNVELNNLNSSQPSQQEN 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00013 922 Gene3D - 414 525 - -
Stsc241658g00013 922 MobiDBLite consensus disorder prediction 840 922 - -
Stsc241658g00013 922 SUPERFAMILY Periplasmic binding protein-like I 3 405 IPR028082 -
Stsc241658g00013 922 Gene3D - 96 261 - -
Stsc241658g00013 922 Gene3D - 526 652 - -
Stsc241658g00013 922 FunFam Glutamate receptor 309 411 - -
Stsc241658g00013 922 FunFam Glutamate receptor 526 656 - -
Stsc241658g00013 922 Gene3D - 308 413 - -
Stsc241658g00013 922 FunFam Glutamate receptor 94 249 - -
Stsc241658g00013 922 CDD GluR_Plant 411 755 - -
Stsc241658g00013 922 FunFam Glutamate receptor 2.7 663 763 - -
Stsc241658g00013 922 Pfam Ligand-gated ion channel 757 787 IPR001320 GO:0015276|GO:0016020
Stsc241658g00013 922 SMART GluR_14 414 757 IPR001320 GO:0015276|GO:0016020
Stsc241658g00013 922 PIRSF IGluLR_plant 1 896 IPR017103 -
Stsc241658g00013 922 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 19 847 IPR015683 -
Stsc241658g00013 922 SUPERFAMILY Periplasmic binding protein-like II 389 756 - -
Stsc241658g00013 922 CDD PBP1_GABAb_receptor_plant 1 368 IPR044440 -
Stsc241658g00013 922 MobiDBLite consensus disorder prediction 840 862 - -
Stsc241658g00013 922 Pfam Receptor family ligand binding region 3 352 IPR001828 -
Stsc241658g00013 922 Gene3D - 706 763 - -
Stsc241658g00013 922 FunFam Glutamate receptor 412 526 - -
Stsc241658g00013 922 MobiDBLite consensus disorder prediction 885 922 - -
Stsc241658g00013 922 Pfam Bacterial extracellular solute-binding proteins, family 3 435 756 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00013 Stsc-Chr241658 119261 124931 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00013 1 907 Ion Channels AT2G29120 48.799 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00013 K05387 - qsa:O6P43_019170 1100.5