Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241658g00012 ATGGTAGTGAAGAATAATCAGCAGGCTCCTACCACTTTGGTGGTTCTGAGGCTACTACTTTTTGGTGTGGTAGCAACAGTAGTGATGGGTCAAAGTCAAAGTAACAAGGGTGCAACAACAAGAGTAGTGAAAGTAGGAGCGGTTCTTGATGTTGGTGGAGGAGGAATGGTTGGAAAGATGGGTTTGAACAGCATCACAATGAGTATCCATGATTTCTATGTCTCCAATCCTCATTACAAAACTAGGCTCCAACTTATCCTTAGGGACTCCCAAAGAGACCTTCTTATTGCTGCTGCTCAAGCTTTGGATCTTATAAAGAATGAGCAAGTGGAAGCTGTGATAGGACCAGTTACAACTATGGAAGCCATGTTTGTGGTCAACCTCGGAGACAAAGCTCACGTACCTATTCTCAGTTTCTCAGCTACAAGCCCTTCTCTCTCATCACTCCACACCCCATATTTCTTTCAAATTGCACAGAAGGACACAACTCAGGTGGAAGCCATAACCTCCATTATCCAAGCTTTTGGGTGGAGAGAAGTTGTTCCAATTTATGTGGACAACACTTACGGCCAAGGACTCATTCCATCCCTTACCAATTCACTTCAGAAAGCATACATCCGCGTTCCTTATCTCACTCCCATTGATTACTCAGCCACAGATGATGCCATTGCAAAAGAGCTGTACAAGCTCATGACTATGCAAACAAGAGTGTTTGTTGTTCACATGACACCCCCTCTTGGCACTCGCCTCTTCTCCATTGCTAAGACCATTGGCATGATGGATCATGGTTATGTTTGGATTCTCACTGATGGAATGGCCAATTTCTTCAACTCGTTGGACTCTTCAATTATGGAATCCATGGAAGGTGTCTTGGGTGTTAGGCCTTATATTCCAAGAACAAGACAGCTTCTTGATTTTAGAGCAAGATGGAAAAGACACTTCCTGAGAGACAATCCAACACTTGTTGATATCAATCTGAATGCTCTTGGAATATGGGCTTATGATGCTACCACTGCCTTGGCCATGGCCGTTGAGAAACTTGACACCACCCTTTCTGGCTTCACTCATGTCAGCAACAACTCAAGCCATGTGACTGATCTTGAAAGCTTTGGTGTTTCGCGAAACGGTGAGAAGCTGAGGGAAGCTTTGTCAAATGTTAGATTCAAAGGTGTGGGTGGTGACTTCAAATTAGTTGGCAATGGGGAGTTACAAGCATCACCATTTGAGATACTTAATGTCATTGGTAATGGCGAAAGAAACATTGGATTTTGGATGCCACAAAAGGGACTCATCAGAAACATGGATGACAAAAATTCAACAACAACAACAACAACAACAACAGCATATTCAACTTCTAAGAAGAATCTAGGAACTATTATATGGCCAGGGGACTCTTACTCTCTTCCAAAGGGATGGCAGATTCCCACAAATAGTATCAAGTTAAAGATAGGGGTTCCAGTGAAAGCTTGTGGCTACACCGAATTTGTGAGAATAATCCATGACCCTGTTACCAATTCTACAAAGGTCACTGGGTTCTGCATTGATGTCTTCAATGCTGTGGTAGAAGCGTTGCCTTATGCCCTTCCTTTTGAATTCATTCCATTTGAAAAGTCCAATGGTGAGATGGCAGGAACCTATGACGATTTGATCTCCCAAGTTTATTATGGGAACTTTGATGCTGTGGTGGGGGATACAACCATTACAGCAAATAGGTCAAGTTATGTTGATTTCACATTGCCATACACAGAATCTGGTGTGACCATGGTTGTTCCAATAAGAGACAACAGAAAGAAGAATGCATGGGCCTTCTTGAAGCCATTGACATGGGACCTTTGGGTTACAACATTTTGTACATTTTTATTCATAGGATTTGTTGTTTGGGTACTTGAACACCGAATCAACAGCCATTTCAGAGGGCCTCCTTCTTATCAGATTGGCACTAGCCTCTGGTTTTCCTTCTCAACCATGGTGTTTTCTCATCAGGAGAAAGTGGAGAGTAACTGTGGAAGATTTGTGGTGATAGTATGGGTTTTCTTTGTTCAAATTCTGGTTCAAAGCTACACTGCAAGCCTTACATCTCTCTTAACAGTTGAACAACTAAACCCAGCGAATACTGATGTTCATCAACTCTTAAGGAATCGGTTGAATGTTGGTTATCTTCAAGGTTCTTTTGTTCGTGGAATCCTGAAGGACATGGGGTTCAAGGATGACCAGCTCAAGGTTTATAATTCCGTGGAAGAATGCGATGATCTCTTTACAAAAGGAAGCGCCAATGGCGGCATCGATGCGGCGTTCGACGAAGTCCCCTACGTGATGCACCTCCTTGGGACTTACTGTTCCAAGTATGCCATGGTTGAGCCAAGATTTAAAACCGGTGGCTTTGGCTTTGCATTTCCGAAAGGGTCGCCTCTTGTGGGAGACATATCAAGGGCAATATTGAATGTGAGTGAAGGAGACAAAATGAGAAGAATTGAGAATGCATGGTTGAATGGAAGCAGTAGTTGTATCAATAGTAATGCACAAGTATCTTCTTCTACAAGCCTAGGACTTGAAAGCTTCTGGGGTCTGTTCTTGGTTGTAGGAATTTCTTGCATATTAGCACTCATAATCTTTTTAGCCACATTCCTATATCAGCACAGAGATATTTTGTCAAATCACGATCGTTCTGATAATAGTTCCTTAAAAAAACGGATTGGAAAGTTGCTAACTACCTTCAATGATAGAGACTCGAGTTCACACACTTTCAAGAAAAGTGACTCAGCAACTGTGACATGTAGTCCTACGTCAGCATCACCAATTAGTCCATCTAGTTACACAGAATCAAACTTTTCGGTGAGTCCAGATCCACGTCGTTATTATGCTGCTCATCAACACAAAGCTACACAAGAACCTGCTCCCATTGATGCTAACTCTCAAGCCACGTAG 2925 0.4253 MVVKNNQQAPTTLVVLRLLLFGVVATVVMGQSQSNKGATTRVVKVGAVLDVGGGGMVGKMGLNSITMSIHDFYVSNPHYKTRLQLILRDSQRDLLIAAAQALDLIKNEQVEAVIGPVTTMEAMFVVNLGDKAHVPILSFSATSPSLSSLHTPYFFQIAQKDTTQVEAITSIIQAFGWREVVPIYVDNTYGQGLIPSLTNSLQKAYIRVPYLTPIDYSATDDAIAKELYKLMTMQTRVFVVHMTPPLGTRLFSIAKTIGMMDHGYVWILTDGMANFFNSLDSSIMESMEGVLGVRPYIPRTRQLLDFRARWKRHFLRDNPTLVDINLNALGIWAYDATTALAMAVEKLDTTLSGFTHVSNNSSHVTDLESFGVSRNGEKLREALSNVRFKGVGGDFKLVGNGELQASPFEILNVIGNGERNIGFWMPQKGLIRNMDDKNSTTTTTTTTAYSTSKKNLGTIIWPGDSYSLPKGWQIPTNSIKLKIGVPVKACGYTEFVRIIHDPVTNSTKVTGFCIDVFNAVVEALPYALPFEFIPFEKSNGEMAGTYDDLISQVYYGNFDAVVGDTTITANRSSYVDFTLPYTESGVTMVVPIRDNRKKNAWAFLKPLTWDLWVTTFCTFLFIGFVVWVLEHRINSHFRGPPSYQIGTSLWFSFSTMVFSHQEKVESNCGRFVVIVWVFFVQILVQSYTASLTSLLTVEQLNPANTDVHQLLRNRLNVGYLQGSFVRGILKDMGFKDDQLKVYNSVEECDDLFTKGSANGGIDAAFDEVPYVMHLLGTYCSKYAMVEPRFKTGGFGFAFPKGSPLVGDISRAILNVSEGDKMRRIENAWLNGSSSCINSNAQVSSSTSLGLESFWGLFLVVGISCILALIIFLATFLYQHRDILSNHDRSDNSSLKKRIGKLLTTFNDRDSSSHTFKKSDSATVTCSPTSASPISPSSYTESNFSVSPDPRRYYAAHQHKATQEPAPIDANSQAT 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241658g00012 974 SMART GluR_14 480 831 IPR001320 GO:0015276|GO:0016020
Stsc241658g00012 974 SUPERFAMILY Periplasmic binding protein-like I 39 472 IPR028082 -
Stsc241658g00012 974 FunFam Glutamate receptor 600 730 - -
Stsc241658g00012 974 FunFam Glutamate receptor 372 479 - -
Stsc241658g00012 974 Pfam Receptor family ligand binding region 70 415 IPR001828 -
Stsc241658g00012 974 CDD PBP1_GABAb_receptor_plant 44 434 IPR044440 -
Stsc241658g00012 974 Gene3D - 162 325 - -
Stsc241658g00012 974 Gene3D - 600 728 - -
Stsc241658g00012 974 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 899 IPR015683 -
Stsc241658g00012 974 MobiDBLite consensus disorder prediction 925 946 - -
Stsc241658g00012 974 Pfam Bacterial extracellular solute-binding proteins, family 3 505 830 IPR001638 -
Stsc241658g00012 974 PIRSF IGluLR_plant 9 967 IPR017103 -
Stsc241658g00012 974 CDD GluR_Plant 480 829 - -
Stsc241658g00012 974 MobiDBLite consensus disorder prediction 925 974 - -
Stsc241658g00012 974 FunFam Glutamate receptor 2.7 737 837 - -
Stsc241658g00012 974 Gene3D - 335 481 - -
Stsc241658g00012 974 FunFam Glutamate receptor 480 600 - -
Stsc241658g00012 974 Gene3D - 777 837 - -
Stsc241658g00012 974 Pfam Ligand-gated ion channel 831 863 IPR001320 GO:0015276|GO:0016020
Stsc241658g00012 974 FunFam Glutamate receptor 160 315 - -
Stsc241658g00012 974 SUPERFAMILY Periplasmic binding protein-like II 457 830 - -
Stsc241658g00012 974 Gene3D - 482 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241658g00012 Stsc-Chr241658 105755 110163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241658g00012 29 951 Ion Channels AT2G29120 49.026 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241658g00012 K05387 - qsa:O6P43_019170 1125.54