LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc241657g00079	ATGGTGATGGGTAGAAAGTTTGAGAGTTGGGATTGCATTAACAACTTGAGGTGCTGTGGGAATCTTTCCTCACAGGCACACTACCCATCTATGACTACGTATCCGAAAGGGATGTCGCCGGAAGCGGTGGTGGCGGCGGTAGGAACGGAGGCGAAAGCAGTGTTGAGTGTGATGGGGATGACATGTGCTGCGTGCGCTGGATCGGTGGAGAAATGTATAAAGCGATTACCAGGGATTCTACAAGCTGTGGTTGATGTCTTGAATGATAAAGCTCGGGTTCTCTATTATCCATCTATGCTTAATGTGGAGAGAATATGTGAAGCCATTATTGAAGATGCAGGATATGAAGCGAAGCTTATTGAAGAAGAATCATCCAATGATGATGATGAGAACTCTTCTGAGATTTGTAGGGTGCACATAAGGGGCATGACTTGCACTTCTTGCTCTTCAACTCTTGAATCAGCTCTTCAATCCCTTAGAGGTGTTCACACTGCTCAAGTGGCATTGGCAACTGAAGAAGCAGAAATTCACTATGATCCTAACATTCTAACCTATGATCAAATCAAAGAGGCTATAGAGGACACTGGATTTGAATCCATATTAATAAGCACTGGAGATCACATAACTAACATTCATCTTAAAGTTGATGGCATTAAGAATGAACAATCAATAACTGCAATTCAGAACTCTATTCAATCTCTTCCTGGAGTTGTAAACATTGATATATACCGTGACATTAGTAAAGTTTCCATAGCTTATAAACCATACATGACAGGGCCTAGAACCTTCATTCAAGTCATAGAATCTGCAGGTTCTGGATGTTTCAAAGCCGAGATATTTCCGGCTGAAGAAGGAGAAAGAGAGTCACATAAGAAGCAGGAGATTAAGCTGTACTTCAAGTTCTTCATTTGGAGTTTGGTTTTCACCATTCCTGTGTTTCTAACATCAATGGTTCTTATGTATGTGCCTGGAATCAAACATGTTCTTGATATCAAAGTTGTGAATATGCTTAAACTTGGACTGTTACTGAGATGGGAATTGGCTACACCAGTGCAGTTCATCATAGGAAGGAGATTCTACATTGGATCATATAAATCACTGCGAAAAGGCTCTGCCAACATGGATGTGTTGATTGCATTGGGAACAAATGCAGCATACTTTTATTCTGTTTATGTGGTGGCAAGAGCTGCATTCTCAAGAGATTTCAAAGGCAATGATTTCTTTGAGACAAGTTCTATGCTCATTTCGTTTATTCTCTTGGGGAAGTACTTAGAGGTGTTGGCCAAAGGGAAAACTTCTCAGGCCATTGCTAAGCTTATTCACTTGACACCTGATACAGCAATCCTGCTGAATCAAGATGGTGAAGAAGAGATTGATAGCAGGTTGGTACAAAAGAATGATGTGATTAAAGTTGTTCCTGGCGCGAAAGTTGCTTCGGATGGAATTGTTATATGGGGCCAAAGCCATGTCAATGAGAGCATGATAACCGGAGAGGCAAGGCCGGTGGCGAAGAGGAAGGGTGACATGGTTATTGGAGGCACAGTGAATCAGAATGGAGTCTTGCATGTGAAGGTAACAAGGGTTGGATCAGAGAGTGCCCTGTCTCAGATTGTTAGACTAGTTGAGTCTGCTCAGATGGCCAAAGCTCCAGTTCAGAAGCTTGCTGATCACATTTCTAAGTACTTTGTTCCTCTTGTCATTGTGCTTTCTGTTTCAACTTGGCTTGCTTGGTATTTAGCAGGGAAGCTGCATGCATACCCAAAATCATGGATTCCATCTTCCATGAACAGCTTTGAGCTTGCCCTTCAGTTTGGGATATCAGTCATGGTCATTGCATGCCCTTGTGCTCTAGGACTAGCTACTCCTACAGCTGTTATGGTTGGTACTGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGGGGACAAGCTCTAGAAACTGCACACAAGGTGAATTGCATTGTGTTTGACAAGACAGGTACTCTCACAACTGGGAAGCCAGTGGTTGTAACTACAAAGATCTTCAAGAACATGTCAGTTCAACATTTCTTTGAACTTGTTGCAGCAGCAGAGGTGAATAGTGAACATCCCATAGCCAAAGCTATTGTTGAGCATGCCAAGAAGATCATCACAGAAGAAGATGAGCAGAATCATACCTGGCCAGAAGTGCGCGACTTTGTTTCGATCTCAGGACATGGAGTTAAGGCCATTGTTCAAAACAAGGAGATATTGGCTGGGAACAAAAAGCTGATGATGGATCACAACATAGCCATTTCAGTGGATGCTGAAGAAGTACTAGCAGAAGCTGAGAGCCTGGCTCAAACTGGGATTTTAGTATCCTTAGATGGAGAAATAGCTGGAGTCNNNNNNNNNNATCCATTGAAACCTGATGCAAAGGAAGTTATCTCAATTCTCAAGTCCATGAAGATCAGAAGCATCATGGTCACAGGTGATAACTGGGGTACTGCCAATTCCATAGCTAGACAAGCTGGTATTGAAACAGCTATGGCAGAAGCCCAACCTCAAACTAAAGCCACTCAAATAAAAGATTTGCAGAATTCTGGCTACACTGTGGCAATGGTGGGAGATGGAATCAATGACTCGCCGGCACTAGTGGCGGCGGATGTAGGAATGGCTATTGGTGCTGGCACAGACATAGCTATTGAGGCAGCAGACATAGTTCTGATGAGGAGCAACTTGGAGGACATAATAATAGCCATAGACCTTGCTAAGAAAACCTTCAACCGAATACGCCTCAACTACATTTGGGCACTTGGTTACAACCTCTTATCAATTCCAATTGCTGCAGGCATACTTTACCCTTCCACTAGATTCAGATTGCCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTATCAGTGTTGTTTGCTCTTCCCTCTTGTTGAAGAATTACAAGAGACCAAACAAGCTAAACAAGTTGGAAATAAATAGCATAAAGATTGAGTGA	2973	0.4275	MVMGRKFESWDCINNLRCCGNLSSQAHYPSMTTYPKGMSPEAVVAAVGTEAKAVLSVMGMTCAACAGSVEKCIKRLPGILQAVVDVLNDKARVLYYPSMLNVERICEAIIEDAGYEAKLIEEESSNDDDENSSEICRVHIRGMTCTSCSSTLESALQSLRGVHTAQVALATEEAEIHYDPNILTYDQIKEAIEDTGFESILISTGDHITNIHLKVDGIKNEQSITAIQNSIQSLPGVVNIDIYRDISKVSIAYKPYMTGPRTFIQVIESAGSGCFKAEIFPAEEGERESHKKQEIKLYFKFFIWSLVFTIPVFLTSMVLMYVPGIKHVLDIKVVNMLKLGLLLRWELATPVQFIIGRRFYIGSYKSLRKGSANMDVLIALGTNAAYFYSVYVVARAAFSRDFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLIHLTPDTAILLNQDGEEEIDSRLVQKNDVIKVVPGAKVASDGIVIWGQSHVNESMITGEARPVAKRKGDMVIGGTVNQNGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSVSTWLAWYLAGKLHAYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALETAHKVNCIVFDKTGTLTTGKPVVVTTKIFKNMSVQHFFELVAAAEVNSEHPIAKAIVEHAKKIITEEDEQNHTWPEVRDFVSISGHGVKAIVQNKEILAGNKKLMMDHNIAISVDAEEVLAEAESLAQTGILVSLDGEIAGVXXXXPLKPDAKEVISILKSMKIRSIMVTGDNWGTANSIARQAGIETAMAEAQPQTKATQIKDLQNSGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMRSNLEDIIIAIDLAKKTFNRIRLNYIWALGYNLLSIPIAAGILYPSTRFRLPPWIAGAAMAASSISVVCSSLLLKNYKRPNKLNKLEINSIKIE	990

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc241657g00079	990	ProSiteProfiles	Heavy-metal-associated domain profile.	134	200	IPR006121	GO:0046872
	Stsc241657g00079	990	ProSitePatterns	Heavy-metal-associated domain.	57	86	IPR017969	GO:0046872
	Stsc241657g00079	990	SFLD	p-type atpase	637	912	IPR044492	-
	Stsc241657g00079	990	FunFam	Probable copper-transporting ATPase HMA5	765	918	-	-
	Stsc241657g00079	990	NCBIfam	heavy metal translocating P-type ATPase	374	970	IPR027256	GO:0006812\|GO:0016020\|GO:0019829
	Stsc241657g00079	990	FunFam	Copper-transporting ATPase 1, putative	429	545	-	-
	Stsc241657g00079	990	SUPERFAMILY	HMA, heavy metal-associated domain	48	123	IPR036163	GO:0046872
	Stsc241657g00079	990	Gene3D	-	429	545	-	-
	Stsc241657g00079	990	PRINTS	P-type cation-transporting ATPase superfamily signature	491	505	-	-
	Stsc241657g00079	990	PRINTS	P-type cation-transporting ATPase superfamily signature	655	669	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc241657g00079	Stsc-Chr241657	439245	445892	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc241657g00079	51	990	Primary Pumps ATPases	AT1G63440	71.368	0.0	1389

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc241657g00079	K17686		-	gmx:100817431	1498.8

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