Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241657g00079 ATGGTGATGGGTAGAAAGTTTGAGAGTTGGGATTGCATTAACAACTTGAGGTGCTGTGGGAATCTTTCCTCACAGGCACACTACCCATCTATGACTACGTATCCGAAAGGGATGTCGCCGGAAGCGGTGGTGGCGGCGGTAGGAACGGAGGCGAAAGCAGTGTTGAGTGTGATGGGGATGACATGTGCTGCGTGCGCTGGATCGGTGGAGAAATGTATAAAGCGATTACCAGGGATTCTACAAGCTGTGGTTGATGTCTTGAATGATAAAGCTCGGGTTCTCTATTATCCATCTATGCTTAATGTGGAGAGAATATGTGAAGCCATTATTGAAGATGCAGGATATGAAGCGAAGCTTATTGAAGAAGAATCATCCAATGATGATGATGAGAACTCTTCTGAGATTTGTAGGGTGCACATAAGGGGCATGACTTGCACTTCTTGCTCTTCAACTCTTGAATCAGCTCTTCAATCCCTTAGAGGTGTTCACACTGCTCAAGTGGCATTGGCAACTGAAGAAGCAGAAATTCACTATGATCCTAACATTCTAACCTATGATCAAATCAAAGAGGCTATAGAGGACACTGGATTTGAATCCATATTAATAAGCACTGGAGATCACATAACTAACATTCATCTTAAAGTTGATGGCATTAAGAATGAACAATCAATAACTGCAATTCAGAACTCTATTCAATCTCTTCCTGGAGTTGTAAACATTGATATATACCGTGACATTAGTAAAGTTTCCATAGCTTATAAACCATACATGACAGGGCCTAGAACCTTCATTCAAGTCATAGAATCTGCAGGTTCTGGATGTTTCAAAGCCGAGATATTTCCGGCTGAAGAAGGAGAAAGAGAGTCACATAAGAAGCAGGAGATTAAGCTGTACTTCAAGTTCTTCATTTGGAGTTTGGTTTTCACCATTCCTGTGTTTCTAACATCAATGGTTCTTATGTATGTGCCTGGAATCAAACATGTTCTTGATATCAAAGTTGTGAATATGCTTAAACTTGGACTGTTACTGAGATGGGAATTGGCTACACCAGTGCAGTTCATCATAGGAAGGAGATTCTACATTGGATCATATAAATCACTGCGAAAAGGCTCTGCCAACATGGATGTGTTGATTGCATTGGGAACAAATGCAGCATACTTTTATTCTGTTTATGTGGTGGCAAGAGCTGCATTCTCAAGAGATTTCAAAGGCAATGATTTCTTTGAGACAAGTTCTATGCTCATTTCGTTTATTCTCTTGGGGAAGTACTTAGAGGTGTTGGCCAAAGGGAAAACTTCTCAGGCCATTGCTAAGCTTATTCACTTGACACCTGATACAGCAATCCTGCTGAATCAAGATGGTGAAGAAGAGATTGATAGCAGGTTGGTACAAAAGAATGATGTGATTAAAGTTGTTCCTGGCGCGAAAGTTGCTTCGGATGGAATTGTTATATGGGGCCAAAGCCATGTCAATGAGAGCATGATAACCGGAGAGGCAAGGCCGGTGGCGAAGAGGAAGGGTGACATGGTTATTGGAGGCACAGTGAATCAGAATGGAGTCTTGCATGTGAAGGTAACAAGGGTTGGATCAGAGAGTGCCCTGTCTCAGATTGTTAGACTAGTTGAGTCTGCTCAGATGGCCAAAGCTCCAGTTCAGAAGCTTGCTGATCACATTTCTAAGTACTTTGTTCCTCTTGTCATTGTGCTTTCTGTTTCAACTTGGCTTGCTTGGTATTTAGCAGGGAAGCTGCATGCATACCCAAAATCATGGATTCCATCTTCCATGAACAGCTTTGAGCTTGCCCTTCAGTTTGGGATATCAGTCATGGTCATTGCATGCCCTTGTGCTCTAGGACTAGCTACTCCTACAGCTGTTATGGTTGGTACTGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGGGGACAAGCTCTAGAAACTGCACACAAGGTGAATTGCATTGTGTTTGACAAGACAGGTACTCTCACAACTGGGAAGCCAGTGGTTGTAACTACAAAGATCTTCAAGAACATGTCAGTTCAACATTTCTTTGAACTTGTTGCAGCAGCAGAGGTGAATAGTGAACATCCCATAGCCAAAGCTATTGTTGAGCATGCCAAGAAGATCATCACAGAAGAAGATGAGCAGAATCATACCTGGCCAGAAGTGCGCGACTTTGTTTCGATCTCAGGACATGGAGTTAAGGCCATTGTTCAAAACAAGGAGATATTGGCTGGGAACAAAAAGCTGATGATGGATCACAACATAGCCATTTCAGTGGATGCTGAAGAAGTACTAGCAGAAGCTGAGAGCCTGGCTCAAACTGGGATTTTAGTATCCTTAGATGGAGAAATAGCTGGAGTCNNNNNNNNNNATCCATTGAAACCTGATGCAAAGGAAGTTATCTCAATTCTCAAGTCCATGAAGATCAGAAGCATCATGGTCACAGGTGATAACTGGGGTACTGCCAATTCCATAGCTAGACAAGCTGGTATTGAAACAGCTATGGCAGAAGCCCAACCTCAAACTAAAGCCACTCAAATAAAAGATTTGCAGAATTCTGGCTACACTGTGGCAATGGTGGGAGATGGAATCAATGACTCGCCGGCACTAGTGGCGGCGGATGTAGGAATGGCTATTGGTGCTGGCACAGACATAGCTATTGAGGCAGCAGACATAGTTCTGATGAGGAGCAACTTGGAGGACATAATAATAGCCATAGACCTTGCTAAGAAAACCTTCAACCGAATACGCCTCAACTACATTTGGGCACTTGGTTACAACCTCTTATCAATTCCAATTGCTGCAGGCATACTTTACCCTTCCACTAGATTCAGATTGCCACCATGGATTGCTGGAGCTGCAATGGCTGCCTCTTCTATCAGTGTTGTTTGCTCTTCCCTCTTGTTGAAGAATTACAAGAGACCAAACAAGCTAAACAAGTTGGAAATAAATAGCATAAAGATTGAGTGA 2973 0.4275 MVMGRKFESWDCINNLRCCGNLSSQAHYPSMTTYPKGMSPEAVVAAVGTEAKAVLSVMGMTCAACAGSVEKCIKRLPGILQAVVDVLNDKARVLYYPSMLNVERICEAIIEDAGYEAKLIEEESSNDDDENSSEICRVHIRGMTCTSCSSTLESALQSLRGVHTAQVALATEEAEIHYDPNILTYDQIKEAIEDTGFESILISTGDHITNIHLKVDGIKNEQSITAIQNSIQSLPGVVNIDIYRDISKVSIAYKPYMTGPRTFIQVIESAGSGCFKAEIFPAEEGERESHKKQEIKLYFKFFIWSLVFTIPVFLTSMVLMYVPGIKHVLDIKVVNMLKLGLLLRWELATPVQFIIGRRFYIGSYKSLRKGSANMDVLIALGTNAAYFYSVYVVARAAFSRDFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLIHLTPDTAILLNQDGEEEIDSRLVQKNDVIKVVPGAKVASDGIVIWGQSHVNESMITGEARPVAKRKGDMVIGGTVNQNGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSVSTWLAWYLAGKLHAYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALETAHKVNCIVFDKTGTLTTGKPVVVTTKIFKNMSVQHFFELVAAAEVNSEHPIAKAIVEHAKKIITEEDEQNHTWPEVRDFVSISGHGVKAIVQNKEILAGNKKLMMDHNIAISVDAEEVLAEAESLAQTGILVSLDGEIAGVXXXXPLKPDAKEVISILKSMKIRSIMVTGDNWGTANSIARQAGIETAMAEAQPQTKATQIKDLQNSGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMRSNLEDIIIAIDLAKKTFNRIRLNYIWALGYNLLSIPIAAGILYPSTRFRLPPWIAGAAMAASSISVVCSSLLLKNYKRPNKLNKLEINSIKIE 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241657g00079 990 ProSiteProfiles Heavy-metal-associated domain profile. 134 200 IPR006121 GO:0046872
Stsc241657g00079 990 ProSitePatterns Heavy-metal-associated domain. 57 86 IPR017969 GO:0046872
Stsc241657g00079 990 SFLD p-type atpase 637 912 IPR044492 -
Stsc241657g00079 990 FunFam Probable copper-transporting ATPase HMA5 765 918 - -
Stsc241657g00079 990 NCBIfam heavy metal translocating P-type ATPase 374 970 IPR027256 GO:0006812|GO:0016020|GO:0019829
Stsc241657g00079 990 FunFam Copper-transporting ATPase 1, putative 429 545 - -
Stsc241657g00079 990 SUPERFAMILY HMA, heavy metal-associated domain 48 123 IPR036163 GO:0046872
Stsc241657g00079 990 Gene3D - 429 545 - -
Stsc241657g00079 990 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Stsc241657g00079 990 PRINTS P-type cation-transporting ATPase superfamily signature 655 669 - -
Stsc241657g00079 990 PRINTS P-type cation-transporting ATPase superfamily signature 808 818 - -
Stsc241657g00079 990 PRINTS P-type cation-transporting ATPase superfamily signature 861 880 - -
Stsc241657g00079 990 PRINTS P-type cation-transporting ATPase superfamily signature 884 896 - -
Stsc241657g00079 990 ProSiteProfiles Heavy-metal-associated domain profile. 51 118 IPR006121 GO:0046872
Stsc241657g00079 990 FunFam ATPase copper transporting beta 130 204 - -
Stsc241657g00079 990 SUPERFAMILY HAD-like 654 967 IPR036412 -
Stsc241657g00079 990 CDD HMA 54 118 IPR006121 GO:0046872
Stsc241657g00079 990 FunFam Copper-transporting ATPase HMA5 50 122 - -
Stsc241657g00079 990 NCBIfam HAD-IC family P-type ATPase 414 940 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241657g00079 990 ProSiteProfiles Heavy-metal-associated domain profile. 209 275 IPR006121 GO:0046872
Stsc241657g00079 990 CDD P-type_ATPase_Cu-like 302 972 - -
Stsc241657g00079 990 ProSitePatterns Heavy-metal-associated domain. 140 169 IPR017969 GO:0046872
Stsc241657g00079 990 CDD HMA 140 198 IPR006121 GO:0046872
Stsc241657g00079 990 Pfam Heavy-metal-associated domain 55 116 IPR006121 GO:0046872
Stsc241657g00079 990 Pfam Heavy-metal-associated domain 138 198 IPR006121 GO:0046872
Stsc241657g00079 990 Pfam haloacid dehalogenase-like hydrolase 651 875 - -
Stsc241657g00079 990 Gene3D - 47 119 - -
Stsc241657g00079 990 SUPERFAMILY HMA, heavy metal-associated domain 205 275 IPR036163 GO:0046872
Stsc241657g00079 990 SUPERFAMILY HMA, heavy metal-associated domain 134 206 IPR036163 GO:0046872
Stsc241657g00079 990 SUPERFAMILY Calcium ATPase, transduction domain A 444 541 IPR008250 -
Stsc241657g00079 990 ProSitePatterns E1-E2 ATPases phosphorylation site. 657 663 IPR018303 -
Stsc241657g00079 990 Gene3D - 622 918 IPR023214 -
Stsc241657g00079 990 NCBIfam copper ion binding protein 139 198 IPR006122 GO:0005507
Stsc241657g00079 990 NCBIfam copper ion binding protein 53 117 IPR006122 GO:0005507
Stsc241657g00079 990 Gene3D - 662 742 IPR023299 GO:0000166
Stsc241657g00079 990 Gene3D - 743 791 IPR023299 GO:0000166
Stsc241657g00079 990 PRINTS H+-transporting ATPase (proton pump) signature 861 877 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241657g00079 990 PRINTS H+-transporting ATPase (proton pump) signature 892 917 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc241657g00079 990 Gene3D - 208 296 - -
Stsc241657g00079 990 SUPERFAMILY Calcium ATPase, transmembrane domain M 411 649 IPR023298 -
Stsc241657g00079 990 Pfam E1-E2 ATPase 442 633 - -
Stsc241657g00079 990 Gene3D - 133 205 - -
Stsc241657g00079 990 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 6 985 - -
Stsc241657g00079 990 SFLD C1.7: P-type atpase like 637 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241657g00079 Stsc-Chr241657 439245 445892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241657g00079 51 990 Primary Pumps ATPases AT1G63440 71.368 0.0 1389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241657g00079 K17686 - gmx:100817431 1498.8