Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241657g00076 ATGGATGGAAGAGACGCTATGTCATTCTCTAGTGGTTCTGCCTCATTCTACCTGCATAGAGGAGCAGGAGGAGGAGGTGGTGGTGGTGTTGGTGGTTCTAGAACACCAACGCCCCAACCCGGAGCTTTCCAAGGAGGACCACCTGGATTCAGGCATCTCTCAAATGTGAGAGGTTCTGGTGGTGGCTCTGCTTCGGCTGCCTCTGCATTTTCAGCAGAGCCTCGTCATCCCAATTTTGGCCATGGAATCAGCATAGGCTCCTCTTCCCCTGCTGGTGCAGGTGCAGGTGCAGGTGCAGGTGCAGGAGGAGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTAGTGCACCTCTTCCATCTTCAGGGGAGCCTGTGAAGAAGAAAAGAGGGAGGCCAAGAAAGTATGGTCCTGGTGGACCTCTTTTGAGGCTCACTGACACTGCTAATACCTCTCCTGGCTCCGGTACTCCCTTGGAGAAGAAGCGCCGTGGCCGCCCCCCTGGAAGTGGAAGGAAGCAGCAGCTAGCTTCTCTAGGTGAATGGATGAACAGTTCTGCGGGGATGGCCTTCTCACCGCATGTTATAAGTGTTGAATCTGGGGAGGACATTGTAGCAAAGTTATTGTCATTTGCACAGCAGAGACCAAGGGCTTTATGCATCATGTCTGGTACTGGAATAGTTTCTTCGGTCACTATGCGTCAGCCTGCTTCGAATACTCCCAGTGTTACTTATGACGGACGATTTCAAATTTTATGCTTGTCTGGTTCTTATTTGGTTGCGGAAGATGGTGGAGCTCGTAGTAGAACAGGTGGCATCAGTGTTTCTCTTTCTAGTCCCGAGGGTCATGTTATTGGTGGTGGCGTTGCTGCGCTTATTGCCTCAACCCCAGTGCAGGTGGTAGTATGCAGTTTTGTATACGGTGGCAGCTCTAAGGCAAAGCCTAAGCAATTGACAAGCGGAAAAGATAGCGGTTCGGAGCCTCAGAGTAGTGACAGGTTAGCTTCTCCGGCAAGTGCGCCTCCTCCTAGTCAAAACTACAACTCGTCTTCATCCATTTGGCCCGGTTCACAGCCGAGTGATCTGAAAAGTGCACATCCACACACTGGTATTGACTTGACTCGTGGATGA 1125 0.5182 MDGRDAMSFSSGSASFYLHRGAGGGGGGGVGGSRTPTPQPGAFQGGPPGFRHLSNVRGSGGGSASAASAFSAEPRHPNFGHGISIGSSSPAGAGAGAGAGAGGGGGSGGGGGGSAPLPSSGEPVKKKRGRPRKYGPGGPLLRLTDTANTSPGSGTPLEKKRRGRPPGSGRKQQLASLGEWMNSSAGMAFSPHVISVESGEDIVAKLLSFAQQRPRALCIMSGTGIVSSVTMRQPASNTPSVTYDGRFQILCLSGSYLVAEDGGARSRTGGISVSLSSPEGHVIGGGVAALIASTPVQVVVCSFVYGGSSKAKPKQLTSGKDSGSEPQSSDRLASPASAPPPSQNYNSSSSIWPGSQPSDLKSAHPHTGIDLTRG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241657g00076 374 MobiDBLite consensus disorder prediction 311 362 - -
Stsc241657g00076 374 Gene3D - 191 318 - -
Stsc241657g00076 374 CDD DUF296 191 303 IPR005175 -
Stsc241657g00076 374 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 81 346 IPR039605 GO:0003680
Stsc241657g00076 374 ProSiteProfiles PPC domain profile profile. 184 326 IPR005175 -
Stsc241657g00076 374 SUPERFAMILY AF0104/ALDC/Ptd012-like 188 305 - -
Stsc241657g00076 374 Pfam Plants and Prokaryotes Conserved (PCC) domain 191 304 IPR005175 -
Stsc241657g00076 374 MobiDBLite consensus disorder prediction 309 374 - -
Stsc241657g00076 374 MobiDBLite consensus disorder prediction 17 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241657g00076 Stsc-Chr241657 431286 434343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241657g00076 1 374 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 47.202 1.46e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241657g00076 - - aip:107643074 498.434