Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241657g00070 ATGGGGAAGGGTAGACCTAGGGCTGTGGAGAAGGGTGTAGTTGGGGCCACCAACACTGTTACCTGCTGCGGGTCCACCAGTGTTCCCTCAGCGCTTGTGTATTACCCTACTGAGGATGAATTCAAGGATCCCTTAGATTATATTTACAAGATTAGGCCTGAGGCTGAGCCTTATGGGATTTGTAGGATTGTTCCACCTAAGGGTTGGAACCCTCCTTTTGCTTTGGATCTGGATACTTTTACTTTCCCCACCAAGACTCAGGCCATTCATAAGCTCCAGGCTCGCCCCGCCGCCTCTGACCCCAAGACTTTTGACTTGGAGTACACTAGGTTCTTGCAGGACCACTGTGGTAAGAAGTCTAGGAAGAGGGTTGTGTTTGAAGGGGAGGACTTGGACTTGTGCAAGTTGTTCAATGCGGTTAGGCGCTTTGGCGGGTATGATAAGGTTGTTGATGCCAAGAAGTGGGGGGATGTTGCTAGGTTTTTGAGGCCGGCCGGGAAGATTACGGATTGTGCTAAGCATGTGTTGTGTCAGTTGTACCGCGAGCATTTGTATGATTATGAGGAGTTTTATAATAAGATGAATCAAGGGAATGCTAAGAACTGTAATAAAGGTGAGAGAGATGAGAGTAAGAGTGATCACAGAGTGCAATCCTCCATTTCCAAGAAGCATCCCTGCGGGGTTAGTGGTCTGAAAGTTAAGGATTGTAAAGTTCATGTAGAGGAAGAACACGATCAGATTTGTGAGCAGTGCAAGAGTGGTTTGCACGGTGAAGTCATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATTTATTGTCTTTCCCCACCGTTGAAGCAAATTCCACAGGGAAACTGGTATTGTTTCAGTTGCTTGAATTCTGATAGGGACAGCTTTGGTTTTGTGCCTGGGAAGAAGCATTACACATTGGAAGCTTTTAGGCGTATTGCTGATCGGTCAAGGAGGAGATGGTTTGGAACAGGGCCTGTTTCAAGGGTGCAGATGGAGAAAAAATTTTGGGAGATTGTCGAGGGATCAGTTGGTGAAGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTATATGGAAGTGGTTTCCCACGAGTCGCTGATCAGAAAATGCAATCCATTGACGACAAGTTATGGCAAGAATACGCAACAAGCCCATGGAATCTCAATAACCTGCCAAAGCTGAAAGGCTCAATGCTTAGATCTATTCAACACAATATCACTGGTGTTATGGTACCCTGGCTATATATTGGGATGTTGTTCTCATCTTTTTGCTGGCACTTTGAAGATCACTGCTTTTACTCAATGAATTATTTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGCAGTCAAGCCAGTGCTTTTGAGAAGGTGATGAGAAGTAGTCTTCCGGATCTTTTCGATGTGCAACCTGATCTACTTTTCCAGCTTGTTACTATGTTAAACCCTTCTGTCTTGCAAGAAAATGGAGTCCCTGTCTACAGCGTACTCCAGGAGCCTGGGAATTTTGTTATAACCTTCCCACGATCTTATCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCTTTTGGTGCATTTGGTGCTGATCTCTATCAGCGGTATCATAAACCTGCTGTATTGTCACATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGCGATGTTGACAGCAGAGTATCTTCATATTTGAAGAAAGAATTGTTGAGAATATCAGATAAAGAAAAGTCTTGGAGAGAGAAACTATGGAAAGATGGATCCAATGTGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCCGACCATCATCTTTTGTGTGTCTGGAGATGCTGTAATGGTTGGAAGTGATTTGGATGGACTTCAATATCCGGGATTTTACTATTCTGGGTTTGTTACCTTACTGATGCATTGGGAACACCTTTGTGAGTGTAAGACTGTGAAGCTGCGGCTTCTCTACCGTCATTCTCTTGCAGAATTGTTCGAATTGGCCTTTTCTGTGGAAGAATTTACTTCTGATGACAAAGCTGAATGTAGAAGTGTTAGAAGGCAATCTTCTTGTCAGGGTGCTTTGACCAAAAAGGTGAAAGGTAGCTCTGTTACTTTTGATCAACTTGCTACAGAATGGCTTCTACAGTCTAGTATGATTCTTCAGAATCCTTTTCTGAGCAATGTGTTTGTTACAACACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGATTCTGTTCGAGATATGGTGAAGACCTTGGTTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGTGTAACAAAAATTGAGTTTTGGTATCAAGACTCAAATGCAAAGAAAGTTCGTTTAAAATTCATTGATGAGTTGTTGAGATTTAATCCTCCACCTTGCAATGAGCCTAATTATACTAAATTGAAGGAATACGCTGAAGAAGCAAGGTTATTAGTTCAGGAGATTGATACTGCTTTATCTACATGTTCAAAGATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTGCCCATCTACATGAAAGAGATTAAGAAATTAGAAGGGAGGATTTCTTCAACTAAGACATGGCTGGACAGCGTTAGAAAGTGTATCGCTGTGAGACATCCTACTGTCTTAGAAGTTGACATTCTTTACCAGTTAAAGTCAGAGATTTCGGATCTTCAAGTTCATCTTCCAGAGAAAGAGGTGCTTGAGAATCTTCTAAGTCAAGCTGAATCTTGTAGCATCCAATGTCGTGAGATGTTAGAAGGGCTTATGAATCTAGAGAATGTTAGTTTGCTGCTTAAGGAATGGGACAATTTTACAGTTGCTGTACCGGAGTTGCAGCTTCTAAGACAATACCATTCAGATACTGTGTTGTGGCTTGCCCGTGTTAATGATGTTTTAGGGAGAGCTCATGTGCAGGGAGATCAACATAATACAGTTAATGAATTGATGTGCATTTTTGAAGAAGGTTCATCTTTAAAAATTCAAGTTGATGAGTTGCCATTAATTGAGATGGAGCTGAAGAAAGCTAGTTGCCGGGAGAAGGCTTTGAAGGCTTGTGATTCTAGAATGCCTTTGGAATTTATTCAGCAACTGCTTGAGGAAGCTACAATGCTACACATTGAGGAAGAGAAACTATTCATTAATTTATCTCGTGTCCTTGCTCTTGCCATACCTTGGGAAGAAAGGGCTAGAGAGATGCTTTCACATGAGAATCCTATTTCTGACTTTGAGGACATGATCAGGGATTCAGAAAACATATTTGCTATTCTTCCTTCGCTTAATGATGTTAAAGATGCACTTTCTGAAGCTAATCTATGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTGCGTGTGCTTCAAATTCTTTGCTGAAAGTTGAGGATTTGCAGATGTTGGTTTCTGAATCAAAGCGTCTCAAAATATCTTTGGGAGAAAGAAAGATGCTGGAACTAGTTTTGAAGAACTGCAAACTTTGGGAATGTGAAGCATCTTCTCTATTGGATGATTGTCGGTGCCTTTTCGAATTGGATAACAATGTCGATGGAATAAGCAGTGATTTAATGTTTAGGGTGGAAGATTTGATTGCAAGAATCCAATCTGCTATAGCATCTGGTGTTTCACTTGGTTTTGACTTCATAGAGATTTCAAAACTTAAAGCATCTTGTTCTACACTGCATTGGTGCAAAAGAGCCCTTTGTTTCAGGGATTGTGCTCCTTCTTTAGAGGATGTTTTGGAGGTTGTGGAAGGCCTTTCTCATTCCAGTGTTTCTGGTGCGCTGTTGAAAGTACTGGTTGATGGGGTTGAATGGCTTAGGAGAGCATTGGAGGGAATGTCTCAACCTTGTAATTCAAGAGGATGCCATTTGACTGAGGTTCAAGATACTCTTAACGATTATAAGAATGTTAATATGACTTTTGGAGCAGTATACTGTCAACTTGAAGAAGCCATTAGAAAACATATGTTGTGGCAAGAACAAGTGCACCAATTTTTTGGTCTGAATTCTAGGGATCGATCATGGTCATTGATGTTGCAGCTAAAGGAGCTTGGAGATACTGTTGCTTTCAGTTGCTCAGAACTAGATATGGTTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAACGATGCAGTGACAAAATAGGAACTTCTGTCCAAAATGACAATTTGCTGTTTAATGCGCTGGAGAAGATAAAACAGAGTCTAGATAGATCATTGTTCATATATGGCGATGTTCAAGAAAGGAAGGATCAAAACCTATGCATCTGCTGTCTCTTGGATTCTGGGTATCAGGAATTTCTTACTTGTTCGACTTGTATGGACTGCTATCATTTGCAGTGCATTGGACTAACAGCAAAGGACACCTGCGTTGAAAACTATAAATGCCCTTACTGTGCAATTTTGATGGGCGAATCATGTTATCCAAGTGGTGGTGGCCTCCTGAGGTTTGGTAAGAAGCATATTGAATTTAAAATTCTCACTGGCCTTCTGTCTGAAGCTGAACATTTCTGCTTGAGGATTGATGAAATGGATGTTCTGAATGAACTTGTTGAGAAAGCCCTTTTGTGCAAATCTTTCTTGAGAGAAATACTAAACTTTGCATCAACTGTTACTGGTGAAGATATAAGCATTCTCTCTGAAAAATTGACGAAAGCTATAAAAGCTAGCGATGTGGCCGGTGTCTATGATGAACATGATAGTTCTGACCTTGAGTTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGTCAATAGATTGCTAAATGGTGTATGCAAGCCCACAATCAGGCAGATTCAGAAGCATATGAATGAGGGAGTGGATATGGAAATATTGTCCGAAGATCACTATATGCTGAAACTTACAAATGTGAATTGCTTGGGTTTGCACCTAGATAGAGTTTTCGAAGTAATAGAAGAAGGTGAAAAGTTGCCTGTTGATGTAGATGAGGAACTCAAGATGTTGAGGTCTCGATGCATGCTTTATTGTATATGTCGAAAGCCCTATGATAAAAAAGGGATGATAGCATGCAAACAATGCAAAGAGTGGTATCACTTTGATTGCATGAAATTACCATGCACGCAGAAGTTCTACGTTTGTCCTGCGTGCAACCCCTGTGCTGAAGAACCATTGCCAACAAACCATGAGAGATTAACTAGTGCTAAGTTTGTGGAGCCTAAAACCCCATCCCCAAGGCATACAAACCCAAGAAAGAAACAGAAAAGAGATGTGGGCAGTGTCACTTTGAAGATGTTTACAACAACAGCAGAAGAAGATAGAGATAGTAGTAGGTGTAGGAATTCTAATGGGGTAGAATGTCTTAGGTGGCAAAACCGAAAGCCTTTTAGAAGAGCAGCTAAGAAACGTGTTGAGCTTCGAAGTCTTACTCCATTTCTATACACAACGATAAGCGATAAGCGATAA 5505 0.4124 MGKGRPRAVEKGVVGATNTVTCCGSTSVPSALVYYPTEDEFKDPLDYIYKIRPEAEPYGICRIVPPKGWNPPFALDLDTFTFPTKTQAIHKLQARPAASDPKTFDLEYTRFLQDHCGKKSRKRVVFEGEDLDLCKLFNAVRRFGGYDKVVDAKKWGDVARFLRPAGKITDCAKHVLCQLYREHLYDYEEFYNKMNQGNAKNCNKGERDESKSDHRVQSSISKKHPCGVSGLKVKDCKVHVEEEHDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPQGNWYCFSCLNSDRDSFGFVPGKKHYTLEAFRRIADRSRRRWFGTGPVSRVQMEKKFWEIVEGSVGEVEVMYGNDLDTSVYGSGFPRVADQKMQSIDDKLWQEYATSPWNLNNLPKLKGSMLRSIQHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQASAFEKVMRSSLPDLFDVQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPFGAFGADLYQRYHKPAVLSHEELLCVVAQYGDVDSRVSSYLKKELLRISDKEKSWREKLWKDGSNVHYLPAISLSLCCCVQLPTIIFCVSGDAVMVGSDLDGLQYPGFYYSGFVTLLMHWEHLCECKTVKLRLLYRHSLAELFELAFSVEEFTSDDKAECRSVRRQSSCQGALTKKVKGSSVTFDQLATEWLLQSSMILQNPFLSNVFVTTLRKAEQFLWAGSEMDSVRDMVKTLVEAQKWAEGIRDCVTKIEFWYQDSNAKKVRLKFIDELLRFNPPPCNEPNYTKLKEYAEEARLLVQEIDTALSTCSKMSELELLYSRACGLPIYMKEIKKLEGRISSTKTWLDSVRKCIAVRHPTVLEVDILYQLKSEISDLQVHLPEKEVLENLLSQAESCSIQCREMLEGLMNLENVSLLLKEWDNFTVAVPELQLLRQYHSDTVLWLARVNDVLGRAHVQGDQHNTVNELMCIFEEGSSLKIQVDELPLIEMELKKASCREKALKACDSRMPLEFIQQLLEEATMLHIEEEKLFINLSRVLALAIPWEERAREMLSHENPISDFEDMIRDSENIFAILPSLNDVKDALSEANLWLRNSKPYLVSSACASNSLLKVEDLQMLVSESKRLKISLGERKMLELVLKNCKLWECEASSLLDDCRCLFELDNNVDGISSDLMFRVEDLIARIQSAIASGVSLGFDFIEISKLKASCSTLHWCKRALCFRDCAPSLEDVLEVVEGLSHSSVSGALLKVLVDGVEWLRRALEGMSQPCNSRGCHLTEVQDTLNDYKNVNMTFGAVYCQLEEAIRKHMLWQEQVHQFFGLNSRDRSWSLMLQLKELGDTVAFSCSELDMVLSEVEKVENWKKRCSDKIGTSVQNDNLLFNALEKIKQSLDRSLFIYGDVQERKDQNLCICCLLDSGYQEFLTCSTCMDCYHLQCIGLTAKDTCVENYKCPYCAILMGESCYPSGGGLLRFGKKHIEFKILTGLLSEAEHFCLRIDEMDVLNELVEKALLCKSFLREILNFASTVTGEDISILSEKLTKAIKASDVAGVYDEHDSSDLELALAKNLWKIQVNRLLNGVCKPTIRQIQKHMNEGVDMEILSEDHYMLKLTNVNCLGLHLDRVFEVIEEGEKLPVDVDEELKMLRSRCMLYCICRKPYDKKGMIACKQCKEWYHFDCMKLPCTQKFYVCPACNPCAEEPLPTNHERLTSAKFVEPKTPSPRHTNPRKKQKRDVGSVTLKMFTTTAEEDRDSSRCRNSNGVECLRWQNRKPFRRAAKKRVELRSLTPFLYTTISDKR 1834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241657g00070 1834 ProSitePatterns Zinc finger PHD-type signature. 1690 1730 IPR019786 -
Stsc241657g00070 1834 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Stsc241657g00070 1834 Pfam PLU-1-like protein 950 1196 IPR013637 -
Stsc241657g00070 1834 Pfam PLU-1-like protein 773 937 IPR013637 -
Stsc241657g00070 1834 Pfam PLU-1-like protein 1149 1406 IPR013637 -
Stsc241657g00070 1834 Pfam ARID/BRIGHT DNA binding domain 111 188 IPR001606 GO:0003677
Stsc241657g00070 1834 FunFam Predicted protein 354 557 - -
Stsc241657g00070 1834 SMART PHD_3 1689 1731 IPR001965 -
Stsc241657g00070 1834 SMART PHD_3 1448 1494 IPR001965 -
Stsc241657g00070 1834 SMART PHD_3 247 293 IPR001965 -
Stsc241657g00070 1834 Pfam PHD-finger 247 294 IPR019787 -
Stsc241657g00070 1834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 294 IPR013083 -
Stsc241657g00070 1834 SMART JmjN_1 30 71 IPR003349 -
Stsc241657g00070 1834 SUPERFAMILY FYVE/PHD zinc finger 1437 1495 IPR011011 -
Stsc241657g00070 1834 CDD PHD_RSF1 248 292 - -
Stsc241657g00070 1834 SMART cupin_9 386 552 IPR003347 -
Stsc241657g00070 1834 CDD ARID 100 188 - -
Stsc241657g00070 1834 SMART ARID_2 95 188 - -
Stsc241657g00070 1834 ProSiteProfiles Zinc finger PHD-type profile. 245 295 IPR019787 -
Stsc241657g00070 1834 PANTHER LYSINE-SPECIFIC DEMETHYLASE 26 947 - -
Stsc241657g00070 1834 Pfam jmjN domain 33 65 IPR003349 -
Stsc241657g00070 1834 ProSitePatterns Zinc finger PHD-type signature. 248 292 IPR019786 -
Stsc241657g00070 1834 SUPERFAMILY FYVE/PHD zinc finger 238 295 IPR011011 -
Stsc241657g00070 1834 Pfam JmjC domain, hydroxylase 419 535 IPR003347 -
Stsc241657g00070 1834 Gene3D Cupin 13 536 - -
Stsc241657g00070 1834 Gene3D - 98 202 IPR036431 GO:0003677
Stsc241657g00070 1834 MobiDBLite consensus disorder prediction 201 222 - -
Stsc241657g00070 1834 SUPERFAMILY ARID-like 81 198 IPR036431 GO:0003677
Stsc241657g00070 1834 ProSiteProfiles JmjC domain profile. 386 552 IPR003347 -
Stsc241657g00070 1834 SUPERFAMILY Clavaminate synthase-like 375 567 - -
Stsc241657g00070 1834 SMART bright_3 99 193 IPR001606 GO:0003677
Stsc241657g00070 1834 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1674 1732 IPR013083 -
Stsc241657g00070 1834 MobiDBLite consensus disorder prediction 1747 1773 - -
Stsc241657g00070 1834 SUPERFAMILY FYVE/PHD zinc finger 1683 1738 IPR011011 -
Stsc241657g00070 1834 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Stsc241657g00070 1834 MobiDBLite consensus disorder prediction 202 220 - -
Stsc241657g00070 1834 FunFam Transcription factor jumonji (JmjC) domain-containing protein 17 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241657g00070 Stsc-Chr241657 400428 414576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241657g00070 31 95 JUMONJI Transcription Factor Family AT1G08620 55.072 4.15e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc241657g00070 PLU-1 4.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241657g00070 K11446 - gmx:100789512 2783.82