Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241657g00068 ATGGACCCGGAGAAGGTGAAGAAACAGCTTGCTTTAACTGTGAGAAGCATTCAATGGAGCTATGCAATCTTTTGGTCTAACTCACCTACCCAACCAGGGGTGTTGAGCTGGGGTGAAGGTTATTACAATGGAGACATCAAGACTAGAAAGACAAGCCAAGTAGCAGAACATAATAACTCTGATGAGATAATAAGCTTGAAGAGAAGTGAGCAGCTGAGAGAGCTATACTCGTCCCTTCTTGCAGACTCGAAATCATGCTCGCAGACGAAAAGGCCATCGGCGGCACTGTCCCCTGAAGATCTCACAGATACTGAGTGGTTCTATTTGGTTTGCATGTCATTTGTGTTCAACATTGGCCAAGGTTTACCTGGAAGATCACTGGGTTACGGTCAACCTATTTGGCTTTGCAATGCTCATTCTGCTGATAACGGAGTTTTCTGTCGCTCACTACTTGCTAAGACAGTGGTGTGCTTTCCCTTTCTGGATGGGGTTATTGAGCTTGGTACAACTGATCCGGTCTCGGAAGACTATAGTCTTATTCAAGTGATAAGGAATTCTTTCTTGGATATTCTTGAAACCAATCTTCCAAATAACTCAGGAGTTACTTTGAACACAAGAAACAAGGAAGAAGGTGGTGTTGCATGTGGAGATGAACTAATCAACATAACTTCTCCTACTACTAGTTCAAATGCATTACAAGCCAACCAACCAACAGATGGAAGAACAAGATTCACAACTGAATTCAGCAACTGTTTCCCTAACTACATGAATTATAGTGATTGTTTGTCCCAAAATCCTTGTGCACAGGACCCTCAACAATGCAATACTAATCCAAAATCAATCTTGGTAGATCTTGGAAGCGACGATAAGAATTATCAGAGGCTACTATCTGCCCTTCCAAGATGCCCTGATGATGATCAATTCATCGTGGGATTGCATCATCGAAATTTTCGTGTGGAATCAAGCTTTGCCATTTGGAAGGAACTAGGATCAATGGATTGTAAGAGATCAAGAGGAGGAGGAACACCACAAAAGTTGTTAAAGAAGGTATTGTTTGAAGTTCCTCTGATGCACATGGATGGATTGCTTGTGTCTCAAGAAAAGAATGGCTATGATGTTGGCATGAACCATGCTTTGTCAGAAAGAAAGAGAAGAGCAAAACTAAATGAAAGGTTTTTAATTCTAAGATCAATGGTGCCTACAATTAGTAAGGATGACAAAGTTTCAATATTAGATGATGCCATGGAATACCTTAGAAAACTTGAGGAAAAGGTAAGAGAGTTAGAAGCCAAAAAGGATGTAACAGATTTTGATGGTATAGTAAGTACAAGAACATCTCAGGATATGGGGGAGAGGACTTCTGATACTAATGGCAACAAAAATTCGAAGTCGGTGTCAAACAAGAGGAGGGCTTGGGAGGCTGCTGGTGATGAAGAGATGAACAATTCAGAGATTGATGTTGGAATCAATGTGAGTGAGAGTGAAGTTGTGATCGAAATGAAGTGCCCTTGGAGAGAAGGAGTTCTGCTGGAAACTGTGGAAGCACTTAGCAGCCTCCATTTAGATTGTCATTCACTTCAGTCATCAGAATCTCATGGGAATCTCTATCTCACAATTAAATCTAAGTTGAGAGGACCAAATAATGTTGCAGCAGTAAAAAGGATTAAACACACACTCCAAAAAGCCGCTATGAAGAGTTGA 1701 0.4103 MDPEKVKKQLALTVRSIQWSYAIFWSNSPTQPGVLSWGEGYYNGDIKTRKTSQVAEHNNSDEIISLKRSEQLRELYSSLLADSKSCSQTKRPSAALSPEDLTDTEWFYLVCMSFVFNIGQGLPGRSLGYGQPIWLCNAHSADNGVFCRSLLAKTVVCFPFLDGVIELGTTDPVSEDYSLIQVIRNSFLDILETNLPNNSGVTLNTRNKEEGGVACGDELINITSPTTSSNALQANQPTDGRTRFTTEFSNCFPNYMNYSDCLSQNPCAQDPQQCNTNPKSILVDLGSDDKNYQRLLSALPRCPDDDQFIVGLHHRNFRVESSFAIWKELGSMDCKRSRGGGTPQKLLKKVLFEVPLMHMDGLLVSQEKNGYDVGMNHALSERKRRAKLNERFLILRSMVPTISKDDKVSILDDAMEYLRKLEEKVRELEAKKDVTDFDGIVSTRTSQDMGERTSDTNGNKNSKSVSNKRRAWEAAGDEEMNNSEIDVGINVSESEVVIEMKCPWREGVLLETVEALSSLHLDCHSLQSSESHGNLYLTIKSKLRGPNNVAAVKRIKHTLQKAAMKS 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241657g00068 566 Gene3D - 373 436 IPR036638 GO:0046983
Stsc241657g00068 566 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 187 IPR025610 -
Stsc241657g00068 566 PANTHER TRANSCRIPTION FACTOR TT8 3 562 - -
Stsc241657g00068 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 375 434 IPR036638 GO:0046983
Stsc241657g00068 566 Coils Coil 411 438 - -
Stsc241657g00068 566 MobiDBLite consensus disorder prediction 443 477 - -
Stsc241657g00068 566 SMART finulus 378 427 IPR011598 GO:0046983
Stsc241657g00068 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 372 421 IPR011598 GO:0046983
Stsc241657g00068 566 MobiDBLite consensus disorder prediction 443 465 - -
Stsc241657g00068 566 Pfam Helix-loop-helix DNA-binding domain 376 422 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241657g00068 Stsc-Chr241657 380045 382740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241657g00068 3 563 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 42.155 2.54e-141 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc241657g00068 bHLH-MYC_N 5.9e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241657g00068 - - gmx:100808167 577.4