Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241657g00058 ATGATGGCTCGAGCAGTGTGCGATGAGAAATCGAGGGAGATGGTGTCATCATCAAGCGGTTTCTGCTACTCATCATCGGGGACCACCATGGAAGGCTTCGTGGCGGACCCTTCAGACATGTTCAACCTCACCACTGCCATCGACATGGTAGGGTTCTCCACCAAGAATCTTGATAACAACAACAACAACCCTCACATGTGGAAAGGACTACCTTCTTCCCCTTCCAATAAGAACATGAACCAATCCTCCTTCTACCAACACGGCAGCAGCAGCAACAATAATAATCATAATCTAATGGTTGGGGGTGATGATGATGACGATTCATCATACAGGTTGGTGGTTGACGATTCATCTCTGAGGTGTGTGTTCCCCTGTGAAGGAAACGAGAGGCCAAGTCAAGGTCTCTCACTCTCTCTCAGTTCAACCAATCCTTCATCCATTGGCTTGCAATCTTTTGAGCTAAGACAAACCACTCATCATCACCCTTATTATGCATATCAAAATTCTCCTAATAATAAAGCTGGCGCTGCACCTTCATCATCCTCATCAACTAGTGTGCTCAAGAACTCCAAGTACTTGGCGGCAGCGCAGGAGCTTCTCAACGAGTTTTGTAGCCTAACCATAAAGCACACTAGTGACGCCACAAAACACAAGTCCAACAACCACCTCAACTGGGAAGATCACGATAACGGTACCACCACTCCCTCAAAGAAGCCTTCTCTTACCTCTCTTGAATTTGTGGAGCTGCAAAAGCGAAAGACCAAACTGCTTTCCATGCTCGAAGAGGTTGACAGGAGATACAAGAACTACCGGATTCAGATGAAAGGGGTGGTGTCTTCGTTTGAGGCGGTGGCTGGGAACGGAGCGGCCACTGTGTACACGGCTTTGGCACAGAAGGCCATGTCAAGATATTTCAGGAACTTGAAGGATGCGATAATGGGGCAGATTCAGGTGACAAGGAAGGCCATGGGAGAGAAAGATCCAGTTGCACCGGGCACAACCAAGGGTGAAACCCCAAGGCTGAAGATCATTGACCAAGCTTTGAGGCAGCAAAGAGCATTCCAGCAAATGAGCATGATGGAAACTCATCCATGGAGACCTCAGCGCGGCCTTCCCGAGCGCTCCGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTTCTCCATCCTTACCCAAGCGACGTTGATAAACATATTCTAGCCCGCCAAACTGGCCTATCAAGAAGCCAGGTGTCCAACTGGTTTATCAACGCAAGAGTTCGTCTGTGGAAGCCAATGGTGGAGGAAATGTACTCGGAGGAACTGAAGGAACAAGAAAACATGATGGCTAATTCATCGGAGGCTGCTGCCACTGCTGATGACCCGGAACTGGAACATCATAACCTGCCATCCTCACGATCGGAGGATCAGAAGCCAACAGTAATGGTGGTTGGGATGGAATCGGATCAATGTGCATCATCATCCATGCTGGATCCAAAGAGCAGCCATAATCATCCGGAAGAAGAATGCTTGGGGCGAGTAATGGAGACATTTGGGTCGGTGGAGCTTGATTTCTCTTCGTACAGCCAGCAGCAGCAGGGTTTCAATAGTGGAGGAGGGGTTTCTTTGACTCTAGGGTTACAGCAGCACGGTGGAAGCGGGGTGAGCCTGGCGTTCCCTCCTCCTCCTGCTGCTCCTCAGAATTCCGTGTTCTACACAACAAGCAGGGATGATGACATTATTGACAACTGTCCAGCGTCATCATCAGTAGTTCATCAGTACTCTCTTGTTGATGGCGAACCGCAAAATCTTCCCTACAGGAATCTCATGGCTGCACACTTGCTTCATGACCTCGCTGGCTAG 1842 0.4913 MMARAVCDEKSREMVSSSSGFCYSSSGTTMEGFVADPSDMFNLTTAIDMVGFSTKNLDNNNNNPHMWKGLPSSPSNKNMNQSSFYQHGSSSNNNNHNLMVGGDDDDDSSYRLVVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTTHHHPYYAYQNSPNNKAGAAPSSSSSTSVLKNSKYLAAAQELLNEFCSLTIKHTSDATKHKSNNHLNWEDHDNGTTTPSKKPSLTSLEFVELQKRKTKLLSMLEEVDRRYKNYRIQMKGVVSSFEAVAGNGAATVYTALAQKAMSRYFRNLKDAIMGQIQVTRKAMGEKDPVAPGTTKGETPRLKIIDQALRQQRAFQQMSMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYSEELKEQENMMANSSEAAATADDPELEHHNLPSSRSEDQKPTVMVVGMESDQCASSSMLDPKSSHNHPEEECLGRVMETFGSVELDFSSYSQQQQGFNSGGGVSLTLGLQQHGGSGVSLAFPPPPAAPQNSVFYTTSRDDDIIDNCPASSSVVHQYSLVDGEPQNLPYRNLMAAHLLHDLAG 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241657g00058 613 FunFam BEL1-like homeodomain protein 4 368 430 - -
Stsc241657g00058 613 MobiDBLite consensus disorder prediction 215 239 - -
Stsc241657g00058 613 Gene3D - 368 430 - -
Stsc241657g00058 613 MobiDBLite consensus disorder prediction 437 471 - -
Stsc241657g00058 613 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 451 - -
Stsc241657g00058 613 MobiDBLite consensus disorder prediction 452 466 - -
Stsc241657g00058 613 Pfam Associated with HOX 186 313 IPR006563 -
Stsc241657g00058 613 Pfam Homeobox KN domain 382 421 IPR008422 GO:0003677|GO:0006355
Stsc241657g00058 613 CDD homeodomain 365 426 IPR001356 GO:0003677
Stsc241657g00058 613 MobiDBLite consensus disorder prediction 163 182 - -
Stsc241657g00058 613 MobiDBLite consensus disorder prediction 68 99 - -
Stsc241657g00058 613 ProSiteProfiles 'Homeobox' domain profile. 362 425 IPR001356 GO:0003677
Stsc241657g00058 613 SMART HOX_1 365 429 IPR001356 GO:0003677
Stsc241657g00058 613 MobiDBLite consensus disorder prediction 68 104 - -
Stsc241657g00058 613 SUPERFAMILY Homeodomain-like 366 432 IPR009057 -
Stsc241657g00058 613 SMART prehox3 181 314 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241657g00058 Stsc-Chr241657 318716 322266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241657g00058 123 612 Homeobox Transcription Factor Family AT5G41410 46.618 2.83e-129 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc241657g00058 POX 2.8e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241657g00058 - - lang:109331282 645.195