Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241657g00044 ATGGCGAAAGAACTTGAATACAAAGCCAAAGAAGCATTTTTGGATGACGATTTTGCCCTCGCCGTCGATTACTACTCAGAAGCCATCAACTTGGATCCCAACAACTCTCTTCTCTTTGCCGACAGAGCCCAAGCCCATATCAAGCTCCAAAACTTCACAGAAGCCGTTTCCGATGCAAACAAAGCCATTCAATTGAGTCCTTCACTGGCTAAAGCCTACCTTCGCAAAGGAACTGCGTGCATTAAGCTCGAGGAGTATCACACTGCCAAGGTAGCACTCCAAACCGGTGCCTCTTTTGCTCCCGATGATTCCAGATTCACCAAGCTCATTCAAGATTGTGATCGCTACATTGCAGAGGAAACAAATGATTTTGCTAGCACCTTATTGCCCACTACTCCCGCTGGTAATGGTTCGCGCTTGATTGATACAAGTATCGAGACTACTAAAGAAACTGAAAGAGACAGCTTTGTGCCCCAAATCAATGAAGTCGCAACAAGCAGGCCAAAATTCAGACATGAATACTACCAGAGGCCAGAAGAAGTGGTTGTGACAATATTTGCTAAAGGCATACCAGCAGACAACATTGTTGTTGACTTTGGTGAACAGATTATGAGTGTTACTATTGCTGTTCCTGGGCAAGAACCCTATCGTTATCAACAACGATTGTTCGGAAAGATAATACCCGATAGGTGCAGAGTTGTGGTGTTGTCAACTAAAGTTGAAATTCGCCTTGCAAAAGCTGAAGCTCTTAATTGGACATCTCTGGAATATAGCAAGGATGTGCTTCCTCAAAAAATAAATACTCAAACAAGTCAACCTGAAAGGCCAACATACCCATCATCAAAGCCAAGGACAAAAGATTGGGATAAATTGGAAGCTCTAATGAAAAAAGAGGAGAAAGAAGAGAGGCTAGATGGTGATGCTGCTTTGAACAAATTGTTCCGTGATATTTATCAAAATGCAGATGAGGACATGAGGAGAGCTATGAGCAAGTCATTTTTGGAGTCAAATGGAACCGTACTATCAACTGATTGGAAAGAAGTAGGATCAAAGAAGGTGGAGAGCAGTCCCCCTCAAGGCCTGGAGTTGAAGAAATGGGAATATTGA 1107 0.43 MAKELEYKAKEAFLDDDFALAVDYYSEAINLDPNNSLLFADRAQAHIKLQNFTEAVSDANKAIQLSPSLAKAYLRKGTACIKLEEYHTAKVALQTGASFAPDDSRFTKLIQDCDRYIAEETNDFASTLLPTTPAGNGSRLIDTSIETTKETERDSFVPQINEVATSRPKFRHEYYQRPEEVVVTIFAKGIPADNIVVDFGEQIMSVTIAVPGQEPYRYQQRLFGKIIPDRCRVVVLSTKVEIRLAKAEALNWTSLEYSKDVLPQKINTQTSQPERPTYPSSKPRTKDWDKLEALMKKEEKEERLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVESSPPQGLELKKWEY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241657g00044 368 FunFam Protein SGT1 homolog 1 127 - -
Stsc241657g00044 368 Pfam Tetratricopeptide repeat 70 102 IPR019734 GO:0005515
Stsc241657g00044 368 Pfam Tetratricopeptide repeat 41 68 IPR019734 GO:0005515
Stsc241657g00044 368 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Stsc241657g00044 368 MobiDBLite consensus disorder prediction 264 279 - -
Stsc241657g00044 368 MobiDBLite consensus disorder prediction 264 289 - -
Stsc241657g00044 368 Gene3D - 168 259 IPR008978 -
Stsc241657g00044 368 SUPERFAMILY HSP20-like chaperones 164 264 IPR008978 -
Stsc241657g00044 368 Pfam CS domain 171 246 IPR007052 -
Stsc241657g00044 368 Pfam SGS domain 286 366 IPR007699 -
Stsc241657g00044 368 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Stsc241657g00044 368 CDD p23_CS_SGT1_like 173 256 - -
Stsc241657g00044 368 ProSiteProfiles SGS domain profile. 277 368 IPR007699 -
Stsc241657g00044 368 FunFam Protein SGT1 homolog A 165 270 - -
Stsc241657g00044 368 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Stsc241657g00044 368 SMART tpr_5 70 103 IPR019734 GO:0005515
Stsc241657g00044 368 SMART tpr_5 36 69 IPR019734 GO:0005515
Stsc241657g00044 368 SMART tpr_5 2 35 IPR019734 GO:0005515
Stsc241657g00044 368 ProSiteProfiles CS domain profile. 167 256 IPR007052 -
Stsc241657g00044 368 PANTHER PROTEIN SGT1 HOMOLOG 1 366 IPR044563 GO:0051087
Stsc241657g00044 368 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Stsc241657g00044 368 MobiDBLite consensus disorder prediction 345 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241657g00044 Stsc-Chr241657 264986 268150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241657g00044 1 94 U-box Gene Family AT3G07370 34.043 1.01e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241657g00044 K12795 - gmx:100784022 526.554