Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241657g00034 ATGGAACAGAAAAGCCTCTTGATATCGGCGCTGAGTGTTGGGGTTGGAGTGGGAGTTGGGATTGGCTTGGCTTCTGGACAAAGCCTTGGTAGCACATGGGGTTCAACTTCTTCTTCAAACTCAAACGCCATCACTCCCATCAAGTTGGAGCAGGAAATGCTTAAACTCGTGCTTGATGGCAGAGACAGCAACGTTACTTATGATCACTTCCCTTATTATCTCAGTGAGCAGACAAGGGTTTTGCTGACAAGTGCCGCTTATGTTCATTTCAAGCATCCCGATATTTCTAAATATATGCGCAATCTTGCTCCTGCAAACCGAACTATTCTGCTTTCAGGCCCAGCAGAACCTTACCTGCAGGTGCATGCCAAGGCTTTGGCTCACTACTTTCAGGCCAAGTTGCTTCTCTTGGATTTAACTGACTTTTCATTGAAGATTCAGAGTAGATATGGTTCTTCTGCAAACAAGGAATCTACTTCCTTCAAAAGATCTACTTCAGAGTCCACTCTGGAGCGGTTATCTGACATGTTTGGATCATTTTCAATCTTTTCACAGAGGGAGGAGCCTAAGGTTGCAGGCAAAATACAGAGGCAAAGCAGTGGAGTGGACCTCCAATCGATGCGGGCTGAAGGATCATGTACTCCTCCTAAGCTTCGTAGAAATGTGTCTGCCTCTGCAAATATTAGTAGCCTTGCCTTGCAAAGCAATCCTACAAATCCAGCTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGATGAGAAGCTTCTTATACAGACTCTTTACAAGGTTCTGCATTTTGTGTCGAAAACCTATCCCATTGTGCTATATCTGCGGGATGTTGACAAGTTGCTACATAGATCAACAAGGATTTTTAACCTGTTCCAGAAAATGTTGAGTAAATTATCTGGACCAATTCTAATTCTTGGTTCACGAGTTTTGGATGCTGATAATGACTACCAAGAGGTAGATGACAGGCTCAGATTGCTGTTCCCTTACAATCTAGTAATCAGACCCCCAGATGATGAATCACATCTCATCAGCTGGAAGACTCAGTTTGAAGAGGATATGAAGCTGATACGGGTTCAGGATAACAAGAACCATATCATGGAAGTACTTGCAGCCAATGATCTTGATTGTGATGACCTGGACTCTGTCTGTGTTGCGGACACAATGGTTCTCAGCAACTACATAGAAGAGATTGTTGTGTCTGCAATTTCATATCATTTAATGAATAACAAAGATCCTGAATACAGAAATGGGAAACTTGTTATTCCATGCAATAGTTTGTCCCGTGCATTGAGTATATTCCAAGAGGGCAAATTCAGTGAAAAAGATACGTTAAAATTAGAAGCTCATGCAATAAAATCTGAGAAAAAGGAAAGACCTGCTAAGAAACGAGAAGCGAAGTCTAAAAGTCCTGTTCCTGTTAAGAAGGCTGAAGCAGAAATATCAACTTCACTGGTAAAGGCTGAGGGTGAAAACTCAGCTCCGGCTCCCAAAGTTGAAGTTCCTCCTGATAATGAATTCGAGAAGAGAATAAGACCTGCGGTAATACCAGCAAATGTAATTGGTGTGACATTCTCGGATATTGGTGCCTTAGATGAGACCAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCGGATCTCTTCAAAGGAGGCCTTCTAAAGCTCTGTAGAGGAATATTGCTGTTTGGTCCTCCTGGCACCGGAAAGACAATGCTGGCAAAGGCCATTGCAAACGAGGCCGGGGCAAGTTTCATAAACGTGTCCATGTCTACCATCACTTCCAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTCACGCTGGCAGCTAAGGTCTCCCCAACAATCATATTCATTGATGAGGTTGACAGCATGCTTGGGCAACGGACCAGAGTTGGGGAGCATGAAGCCATGAGGAAAATCAAGAATGAGTTTATGACTCACTGGGATGGACTAATGACAAAACCAGGGGAACGCATCCTTGTTCTTGCTGCAACCAATAGGCCCTTTGACTTGGATGAAGCAATTATTAGGCGATTTGAAAGAAGAATTATGGTAGGGTTACCATCTGTGGAGAACAGGGAAAAAATTTTGAAGACACTTTTGGCAAAAGAGAAGGTCGATGAGGATATTGATTTGAAGGAACTAGCAACTATGACAGAAGGATACAGTGGCAGTGACTTGAAGAATCTATGCATAACTGCCGCTTATAGGCCTGTTAGAGAGTTGATTCAACAAGAGAGACTAAAAGCTCTGGAGAAAAAGCAGAAAGGTACCCAAGAAGATGCTATGGATACAGAAGATGAAGTTAAGCGGAAAAGCCTAATTAAACTTAGGCCCTTGAATATGCAGGACTTGAAAGAGGCAAAGAATCAGGTAAGACTGTTTGAACTTGAAGTATCCCTCCCTGGTTTGTTTGCTTATTAG 2451 0.4292 MEQKSLLISALSVGVGVGVGIGLASGQSLGSTWGSTSSSNSNAITPIKLEQEMLKLVLDGRDSNVTYDHFPYYLSEQTRVLLTSAAYVHFKHPDISKYMRNLAPANRTILLSGPAEPYLQVHAKALAHYFQAKLLLLDLTDFSLKIQSRYGSSANKESTSFKRSTSESTLERLSDMFGSFSIFSQREEPKVAGKIQRQSSGVDLQSMRAEGSCTPPKLRRNVSASANISSLALQSNPTNPAPLKRTTSWSFDEKLLIQTLYKVLHFVSKTYPIVLYLRDVDKLLHRSTRIFNLFQKMLSKLSGPILILGSRVLDADNDYQEVDDRLRLLFPYNLVIRPPDDESHLISWKTQFEEDMKLIRVQDNKNHIMEVLAANDLDCDDLDSVCVADTMVLSNYIEEIVVSAISYHLMNNKDPEYRNGKLVIPCNSLSRALSIFQEGKFSEKDTLKLEAHAIKSEKKERPAKKREAKSKSPVPVKKAEAEISTSLVKAEGENSAPAPKVEVPPDNEFEKRIRPAVIPANVIGVTFSDIGALDETKESLQELVMLPLRRPDLFKGGLLKLCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFIDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILKTLLAKEKVDEDIDLKELATMTEGYSGSDLKNLCITAAYRPVRELIQQERLKALEKKQKGTQEDAMDTEDEVKRKSLIKLRPLNMQDLKEAKNQVRLFELEVSLPGLFAY 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241657g00034 816 Gene3D - 524 696 IPR027417 -
Stsc241657g00034 816 Coils Coil 757 777 - -
Stsc241657g00034 816 Pfam AAA+ lid domain 718 755 IPR041569 -
Stsc241657g00034 816 Pfam ATPase family associated with various cellular activities (AAA) 565 695 IPR003959 GO:0005524|GO:0016887
Stsc241657g00034 816 MobiDBLite consensus disorder prediction 453 480 - -
Stsc241657g00034 816 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 524 699 - -
Stsc241657g00034 816 SMART AAA_5 561 698 IPR003593 GO:0016887
Stsc241657g00034 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 525 772 IPR027417 -
Stsc241657g00034 816 Gene3D - 697 776 - -
Stsc241657g00034 816 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 49 801 - -
Stsc241657g00034 816 MobiDBLite consensus disorder prediction 453 476 - -
Stsc241657g00034 816 ProSitePatterns AAA-protein family signature. 668 687 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241657g00034 Stsc-Chr241657 209017 213626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241657g00034 512 757 Calmodulin-binding Proteins AT3G56690 38.889 1.49e-44 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241657g00034 - - aip:107643102 1263.06