Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc241657g00023 ATGCCTGCGCCTCCTCCTAACAACACCCACCGCACCAAACTCACACACCCCAGGCTCGTCAGGATAACAGTCACTGACGCTGATGCCACCGACTCCTCCAGCGACGAAGCTGAATCCTCCACGCCCCACCACCACCGACCAAGAAAGCTCGTCAACGAGATTCTTATCGAGCCCTGCGCAGTTCTTCCTCGGAAGAGAACCAAGAAGTCAAGCACCCCCGCAAGCAAGCCCAGTGCTCCAGCAATTCGCCGGCAACTCTCCGGCCGGAAGTTCCGGGGAGTAAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGACCCCTCACGTCGCGTGAGGCTATGGTTGGGTACTTATGACACCGCGGAGGAAGCTGCCATGGTGTACGACAACGCGGCTATTAAACTCCGTGGACCAGACGCCCTCACCAATTTCATAACGCCACCACCAACCACAACGGTAGACAATAATAATAATATTAATATTAATATTAATAATAAAAATAAAACTGAACCACCAACTGTTGTGGTAAACGGTTACAGTTCCGGTGAGGAGTCTCAAAGCACGAAGAACAATCACAGTCACAGTCACAGAAGCAATCTGTTCTCTCCAACTTCGGTGCTTCATCATCATCATAATCATTGCTGTTATTCCTTATCAGAGGAAGGTACTGAATCCGTAACGGGCAAAGAGGATGAATATTCGAGCGTGTCGGAGAATGTAAAGGTCAAATCTGAGGAAGATGATTCATCATTCCTTCATATAGCGAGTGATGTGCTGTTTGATTTTGAAGCTTGTTCTTCGTCGTTGGTGGTGCCGGATGTTTTTGACGAAAACAATCTCTTCGCCGACGATTATTGCTCCCTCCTCACTTCTTGTGAGGACTTCGATTTCGGCTTCAAAAGCTGGCACAGAGAGGATGACTTCTTCCAAGATATAACTGATTTATTCCCTTCAGATCCGCTTCTTGCTCTTTGA 981 0.4903 MPAPPPNNTHRTKLTHPRLVRITVTDADATDSSSDEAESSTPHHHRPRKLVNEILIEPCAVLPRKRTKKSSTPASKPSAPAIRRQLSGRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFITPPPTTTVDNNNNINININNKNKTEPPTVVVNGYSSGEESQSTKNNHSHSHRSNLFSPTSVLHHHHNHCCYSLSEEGTESVTGKEDEYSSVSENVKVKSEEDDSSFLHIASDVLFDFEACSSSLVVPDVFDENNLFADDYCSLLTSCEDFDFGFKSWHREDDFFQDITDLFPSDPLLAL 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc241657g00023 326 Gene3D AP2/ERF domain 89 148 IPR036955 GO:0003700|GO:0006355
Stsc241657g00023 326 MobiDBLite consensus disorder prediction 182 201 - -
Stsc241657g00023 326 MobiDBLite consensus disorder prediction 37 51 - -
Stsc241657g00023 326 SMART rav1_2 90 153 IPR001471 GO:0003700|GO:0006355
Stsc241657g00023 326 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 233 - -
Stsc241657g00023 326 Pfam AP2 domain 90 139 IPR001471 GO:0003700|GO:0006355
Stsc241657g00023 326 SUPERFAMILY DNA-binding domain 90 146 IPR016177 GO:0003677
Stsc241657g00023 326 CDD AP2 90 146 IPR001471 GO:0003700|GO:0006355
Stsc241657g00023 326 ProSiteProfiles AP2/ERF domain profile. 90 147 IPR001471 GO:0003700|GO:0006355
Stsc241657g00023 326 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Stsc241657g00023 326 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Stsc241657g00023 326 FunFam Ethylene-responsive transcription factor 2 89 148 - -
Stsc241657g00023 326 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc241657g00023 Stsc-Chr241657 143966 144946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc241657g00023 7 326 AP2-EREBP Transcription Factor Family AT4G23750 41.520 6.60e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc241657g00023 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc241657g00023 - - ahf:112801434 457.218