Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc240g00002 ATGGAGCGTAGAAATAACAATAAGAATAATAGCAACGAAGATATGAGTTTGCCGATTGCAAATGTGGGAAGAATAATGAAGAGAGTGGTGCCAGAAAGCGGAAAGATATCAAAAGAAGGGAAGCAGTTAATGCAAGAGTGTGTGACGGAGTTCATCAGCTTCGTCACTGGCGAGGCCTCCGACAAGTGTCACAAGGAGAATCGAAAGACCGTTAACGGCGACGACATCTGCTGGGCCCTCTCTTCCTTAGGGTTTGACAACTACGCGGAGGTCATCTCCAGGTACTTGTATAAGTACCGCCTTGCTCACACGGATCACAAACTTGCTGCAAATCTTGTAACTAACCACACAAATATCAATAATAACGACAATAAAGACTGA 381 0.4436 MERRNNNKNNSNEDMSLPIANVGRIMKRVVPESGKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEVISRYLYKYRLAHTDHKLAANLVTNHTNINNNDNKD 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc240g00002 126 ProSitePatterns NF-YB/HAP3 subunit signature. 47 63 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc240g00002 126 Gene3D Histone, subunit A 3 125 IPR009072 GO:0046982
Stsc240g00002 126 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Stsc240g00002 126 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Stsc240g00002 126 PRINTS CCAAT-binding transcription factor subunit A signature 44 62 - -
Stsc240g00002 126 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 110 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc240g00002 126 SUPERFAMILY Histone-fold 13 108 IPR009072 GO:0046982
Stsc240g00002 126 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 80 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc240g00002 Stsc-Chr240 17044 17626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc240g00002 11 120 CCAAT-HAP3 Transcription Factor Family AT1G09030 61.062 4.08e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc240g00002 CBFD_NFYB_HMF 9.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc240g00002 K08065 - gmx:100815151 162.925